Locus 4501

Sequence ID 2R_DroMel_CAF1
Location 14,785,982 – 14,786,086
Length 104
Max. P 0.658877
window7206

overview

Window 6

Location 14,785,982 – 14,786,086
Length 104
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 94.38
Mean single sequence MFE -30.43
Consensus MFE -27.27
Energy contribution -26.83
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.89
Structure conservation index 0.90
SVM decision value 0.26
SVM RNA-class probability 0.658877
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14785982 104 - 20766785
AUGCAUAUGCAUAGAUAUAGAUACAAAAGUA----CAUAUGCUCUCCAUGAAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC
((((....))))(((((((..(((....)))----..)))).))).......((((((((((....(((.(((.((((....)))).))))))...))))))).))). ( -27.10)
>DroSec_CAF1 20891 104 - 1
AUGCGUAUGCAUAGAUACAGAUACAAAAGUA----CAUAUGCUCUCCAUGUAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC
.(((((..(((((..(((..........)))----..))))).....)))))((((((((((....(((.(((.((((....)))).))))))...))))))).))). ( -29.00)
>DroEre_CAF1 20203 107 - 1
GUGCAUAUGCAUAGAUACAGAUACAAA-GUACAUGCAUAUGCUCUCCAUGUAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC
(.((((((((((.(.(((.........-)))))))))))))).)........((((((((((....(((.(((.((((....)))).))))))...))))))).))). ( -35.20)
>consensus
AUGCAUAUGCAUAGAUACAGAUACAAAAGUA____CAUAUGCUCUCCAUGUAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC
..(((((((......(((..........)))....)))))))..........((((((((((....(((.(((.((((....)))).))))))...))))))).))). (-27.27 = -26.83 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:25 2006