Locus 4499

Sequence ID 2R_DroMel_CAF1
Location 14,781,141 – 14,781,231
Length 90
Max. P 0.535912
window7202

overview

Window 2

Location 14,781,141 – 14,781,231
Length 90
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 80.35
Mean single sequence MFE -25.10
Consensus MFE -14.43
Energy contribution -14.46
Covariance contribution 0.03
Combinations/Pair 1.22
Mean z-score -1.75
Structure conservation index 0.57
SVM decision value 0.00
SVM RNA-class probability 0.535912
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14781141 90 + 20766785
----UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU
----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00)
>DroVir_CAF1 12825 99 + 1
ACAUAUGUAUGCAG----GCCAGUGCAC---AUUGCACUCGAAUCGCCGUUUUCGCCGCCAACG-UACGCUGCCGCUGCUGUAGUCAAUUGCGUGGUUAAUGCUAAU
......(((((..(----((.(((((..---...)))))((((........))))..)))..))-)))((.(((((.((...........)))))))....)).... ( -27.10)
>DroSec_CAF1 16033 90 + 1
----UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU
----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00)
>DroSim_CAF1 22536 90 + 1
----UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU
----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00)
>DroEre_CAF1 15084 90 + 1
----CCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU
----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00)
>DroYak_CAF1 22612 90 + 1
----CCGUUCGCGCAUGCACAUGUGCAACGCAUAUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCUGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU
----..(((.((((((....)))))))))((((.................-------(-((....)))...((((((-----.(......)))))))..)))).... ( -23.50)
>consensus
____UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU_______G_CAACAUUGCGCCGCCGCG_____ACUCAAUUGCGUGGUUAAUGCUAAU
..........((((((....))))))....................................(((((.(((((.((..............))))))))))))..... (-14.43 = -14.46 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:22 2006