Locus 4497

Sequence ID 2R_DroMel_CAF1
Location 14,775,453 – 14,775,558
Length 105
Max. P 0.974898
window7200

overview

Window 0

Location 14,775,453 – 14,775,558
Length 105
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 73.44
Mean single sequence MFE -34.68
Consensus MFE -19.08
Energy contribution -19.33
Covariance contribution 0.26
Combinations/Pair 1.36
Mean z-score -2.15
Structure conservation index 0.55
SVM decision value 1.74
SVM RNA-class probability 0.974898
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14775453 105 + 20766785
CUC---------CUAGUUCCGCGCAGACGGAACGCAAGUGCCGGGAAUUAUUGAAGAAGUUGCAGAGCAUCACCAAUCAGACAGAUGCCAUGACGCGCAAUUUCUUCAGUAACA
.((---------((.((((((......))))))((....)).)))).((((((((((((((((...((.(((...(((.....)))....))).)))))))))))))))))).. ( -37.30)
>DroSec_CAF1 10370 105 + 1
CUC---------CUAGUGCCGCGCAGACGGAACUCAAGUGCCGGGAGAUAUUGAAGAAGUUGCAGAGCUAUACCAAUCAGACGGAUGCCAUGACGCGCAAUUUCUUCAAUAACA
(((---------(...(((...)))..(((.((....)).))))))).(((((((((((((((.........((........))..((......)))))))))))))))))... ( -32.40)
>DroSim_CAF1 16847 105 + 1
GUC---------CUAGUGCCGCGCAGAUCGAACUCAAGUGCCGGGAGAUAUUGCAGAAGUUGCAGAGCUAUACCAAUCAGACGGAUGCCAUGACGCGCAAUUUCUUCAAUAACA
.((---------(..(..(...(.((......)))..)..)..)))(.(((((.(((((((((.........((........))..((......))))))))))).))))).). ( -24.40)
>DroEre_CAF1 9463 114 + 1
UCAGAAAGAUGGUCAGUUCCGCUCAAACGGAACGCAGUUGCCGCGAUCUAUUGAAGAAGUUGCAGAACCUCACCAAUCAGUCGGAAACCACGGCGCGCAAUUUCUUCAAUACCA
..........((((.((((((......))))))((.......))))))(((((((((((((((.(.....)........((((.......))))..)))))))))))))))... ( -36.90)
>DroYak_CAF1 16723 114 + 1
CCAGAAAGAUGGUCAGUUCCGCACAAACGGAACGCAAGUGCCGAGAUCUUUUGAAGAAGUUGCAGAGCUUCACCAAUCAGUCGGACACCACGGCGCGCAACUUCUUCAAUAGCA
..........((((.((((((......))))))((....))...))))..(((((((((((((.((..........)).((((.......))))..)))))))))))))..... ( -37.10)
>DroAna_CAF1 6438 114 + 1
CCAAGGCGGUGGCCACCUCCGCCCAGACGGAGCACAUCUGCCGGGAGCAGCUCAAAAAGCUGCAAGCGGUCACCAACCAGGCGGACACCACAGCCCGAAACUUCUUCAACUCCA
....(((.((((....(((((......)))))....((((((.((.((((((.....))))))....((...))..)).))))))..)))).))).(((.....)))....... ( -40.00)
>consensus
CCA_________CCAGUUCCGCGCAGACGGAACGCAAGUGCCGGGAGCUAUUGAAGAAGUUGCAGAGCUUCACCAAUCAGACGGAUACCACGACGCGCAAUUUCUUCAAUAACA
...............((((((......))))))...............(((((((((((((((.((..........))...((.......))....)))))))))))))))... (-19.08 = -19.33 +   0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:19 2006