Locus 4496

Sequence ID 2R_DroMel_CAF1
Location 14,770,667 – 14,770,761
Length 94
Max. P 0.977833
window7199

overview

Window 9

Location 14,770,667 – 14,770,761
Length 94
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 92.05
Mean single sequence MFE -21.58
Consensus MFE -19.27
Energy contribution -18.79
Covariance contribution -0.48
Combinations/Pair 1.10
Mean z-score -1.71
Structure conservation index 0.89
SVM decision value 1.80
SVM RNA-class probability 0.977833
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14770667 94 - 20766785
---AUUGGAAUCGGGAAAGAAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG
---........((((...............(((((((((((...(((((((.....))))))).))))))....))))).............)))--). ( -20.69)
>DroSec_CAF1 5523 94 - 1
---AUUGGAAUCGGGAAAAAAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCACCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG
---........((((...............((((((((((((..(((((((.....))))))))))))))....))))).............)))--). ( -22.99)
>DroSim_CAF1 12004 94 - 1
---AUUGGAAUCGAGAAAAAAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG
---........(.(((..............(((((((((((...(((((((.....))))))).))))))....))))).............)))--.) ( -20.43)
>DroEre_CAF1 4310 95 - 1
AGAAUCAGAAUCGGGGAA-AAGGGAAUU-AAGUCGGGAUUGGGAUGCACAUUUUAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG
.....((((.((......-.........-.(((((((((((...(((((((.....))))))).))))))....)))))..........)).)))--). ( -21.77)
>DroYak_CAF1 11601 98 - 1
GGAUUUGGAAUCGAGGAA-AAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUUAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCUGUGG
.(((((....((......-..))......))))).((((((...(((((((.....))))))).))))))(((((.(((.....)))....).)))).. ( -22.00)
>consensus
___AUUGGAAUCGGGAAA_AAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU__GG
.............(((..............(((((((((((...(((((((.....))))))).))))))....))))).............))).... (-19.27 = -18.79 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:18 2006