Locus 4494

Sequence ID 2R_DroMel_CAF1
Location 14,768,420 – 14,768,538
Length 118
Max. P 0.994788
window7196

overview

Window 6

Location 14,768,420 – 14,768,538
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.71
Mean single sequence MFE -22.98
Consensus MFE -20.54
Energy contribution -21.42
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.89
SVM decision value 2.51
SVM RNA-class probability 0.994788
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14768420 118 + 20766785
--CCCAUUUGCAAAAAUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAUACGCUAUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA
--.((((((....)))).....((((((((....((((......((((.((((((((((((((....)).))))))).)))))..)))))))))))))))).))................ ( -23.90)
>DroSec_CAF1 3291 118 + 1
--CCCAUUUGCAAAAAUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAGACGCUAUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA
--.((((((....)))).....((((((((....((((......((((.(((((...((((((.......))))))..)))))..)))))))))))))))).))................ ( -23.70)
>DroSim_CAF1 9758 119 + 1
UCCCCAUUUGCAAAAAUAU-AAGUUACAAAAACAGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAGACGCUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA
...((((((....))))..-..(((((((....(((((......((((.(((((((.((((((.......)))))))))))))..)))))))))))))))).))................ ( -26.50)
>DroEre_CAF1 2152 119 + 1
-CCCCGUUUGCAAAAAUAUAAAGUUACAAAAAAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAAAAGACGGUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA
-..((((((....)))).....((((((((....((((......((((.((((((...(((((.......)))))..))))))..)))))))))))))))).))................ ( -21.00)
>DroYak_CAF1 9396 119 + 1
-CCCCAUUUGCAAAAGUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCCAACAAAGUGUGUCUACUCGAAAAACGGUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA
-..((.(((((....)))))..((((((((....((((......((((.((((((.(((.((.....))...))).).)))))..)))))))))))))))).))................ ( -19.80)
>consensus
_CCCCAUUUGCAAAAAUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAGACGCUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA
...((((((....)))).....((((((((....((((......((((.(((((((.((((((.......)))))))))))))..)))))))))))))))).))................ (-20.54 = -21.42 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:16 2006