Locus 449

Sequence ID 2R_DroMel_CAF1
Location 2,585,306 – 2,585,421
Length 115
Max. P 0.819245
window859

overview

Window 9

Location 2,585,306 – 2,585,421
Length 115
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.90
Mean single sequence MFE -43.85
Consensus MFE -27.25
Energy contribution -28.40
Covariance contribution 1.15
Combinations/Pair 1.31
Mean z-score -1.82
Structure conservation index 0.62
SVM decision value 0.67
SVM RNA-class probability 0.819245
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2585306 115 + 20766785
CUGCCGCUUUGCCUGAUGGAUGCGUAAUUGGAGGUGGCAUCGCCAAGUCUCCAGUUCCUUGAGCUCAUUU-UGGGAGUCCUUCAGGUGCUGGGUUGCCUCUUGAAGUUGGCAAAUA
.(((((((((((((((.((((.....((((((((((((...))))..))))))))((((.(((....)))-.)))))))).))))))((......)).....)))).))))).... ( -40.50)
>DroSec_CAF1 19436 115 + 1
CUGCCGCUUUGCCUGAUGGAUGCGGGAUUGGAGAUGGCAGCGCCAACCCUCCAGUUCCUUGAGCUCAUUU-UGCGAGUCCUUCAGGUGCUGGGUUACCUCUUGAAGUUGGCAUAUA
.(((((((((((((((.((((.(((((((((((.((((...))))...))))))))))....((......-.))).)))).))))))...((....))....)))).))))).... ( -46.20)
>DroSim_CAF1 18640 115 + 1
CUGCCGCUUUGCCUGAUGGAUGCGGGACUGGAGGUGGCAGCGCCAACCCUCCAGUUCCUUGAGCUCAUUU-UGCGAGUCCUUCAGGUGCUGGGUUACCUCUUGAAGUCGGCAAAUA
.(((((((((((((((.((((.((((((((((((((((...))))..)))))))))))....((......-.))).)))).))))))...((....))....)))).))))).... ( -54.00)
>DroEre_CAF1 18287 115 + 1
CUGCCGAUUUGCCUGUUGGAUGCGGUACUGGAGCUGGCAGCACCAAGUCUCAAGUUCUUUGAGCUCCUUU-UGCGAGUCCUCCAGGUGCUGGGUUACCUCCUGAAGUCGGCAAAUA
.((((((((((((((..((((((((....((((((.(.((.((..........)).)).).))))))..)-)))..))))..)))))...(((......))).))))))))).... ( -41.60)
>DroYak_CAF1 18239 115 + 1
CUGCCGAUUUGCCUGAUGGAGGCGGGAUUGCAGCUGGCAGCAGCAAGCCUCAAGUUCCUUGAGCUCGUUU-UGCGAAUCCUCCAGGUGUUGGGUUACCUCUCGAAGUCGGCAAAAU
.((((((((((((((..(((..((.((..((.((((....)))).(((.(((((...)))))))).)).)-).))..)))..)))))..((((......))))))))))))).... ( -43.50)
>DroAna_CAF1 20832 115 + 1
CUGGUGGCUCAUUUUUUGGAUGCGGGAUUGGAGCAGGCAGCGCCAUCCUUCCAGCUCCUUGAUCUGCUUCCUGC-UGGAGUUCAGGUGCUCGUAUGCGGUGGACAGCUUGCAUCGC
..................((((((((.(((..(((.((((((((....(((((((.....((......))..))-)))))....)))))).)).)))......))))))))))).. ( -37.30)
>consensus
CUGCCGCUUUGCCUGAUGGAUGCGGGAUUGGAGCUGGCAGCGCCAACCCUCCAGUUCCUUGAGCUCAUUU_UGCGAGUCCUUCAGGUGCUGGGUUACCUCUUGAAGUCGGCAAAUA
.(((((...((((((..((((..((((((((((.(((.....)))...))))))))))....((........))..))))..))))))..((....)).........))))).... (-27.25 = -28.40 +   1.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:50 2006