Locus 4486

Sequence ID 2R_DroMel_CAF1
Location 14,760,040 – 14,760,160
Length 120
Max. P 0.545857
window7173

overview

Window 3

Location 14,760,040 – 14,760,160
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -26.37
Consensus MFE -20.68
Energy contribution -20.58
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -2.39
Structure conservation index 0.78
SVM decision value 0.02
SVM RNA-class probability 0.545857
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14760040 120 - 20766785
AAAACUAAAAGCAGCGGGCCAAAGUUGAUGCAAUAAUUUGCCACAAGUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAACAAAACUCUACU
.............(((((((...((((..((((....))))(((..(.....)..)))....))))..(((((.....))).)))))))))............................. ( -22.70)
>DroSim_CAF1 427 120 - 1
AAAACUAAAAGCAGCGGGGCAAAGUUGAUGCAAUAAUUUGCCACAACUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAAUAAAACUCUGCU
.........(((((.((((.(((((((..((((....))))..))))))))))((((..((((.......(((.....)))))))))))........................).))))) ( -29.61)
>DroYak_CAF1 1789 120 - 1
AAAACUGGAAACAACGGGCCAAAGUUGAUGCAAUAAUUUGCCACAACUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAAUAAAAUCCUACU
.....((....))((((((((((((((..((((....))))..)))))))...............((...(((.....))).)))))))))............................. ( -26.80)
>consensus
AAAACUAAAAGCAGCGGGCCAAAGUUGAUGCAAUAAUUUGCCACAACUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAAUAAAACUCUACU
...............(((..(((((((..((((....))))..)))))))..(((((..((((.......(((.....)))))))))))).......................))).... (-20.68 = -20.58 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:55 2006