Locus 4484

Sequence ID 2R_DroMel_CAF1
Location 14,755,323 – 14,755,443
Length 120
Max. P 0.938810
window7170 window7171

overview

Window 0

Location 14,755,323 – 14,755,443
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -36.90
Consensus MFE -22.75
Energy contribution -21.53
Covariance contribution -1.22
Combinations/Pair 1.45
Mean z-score -2.93
Structure conservation index 0.62
SVM decision value 1.30
SVM RNA-class probability 0.938810
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14755323 120 + 20766785
AGAUUGAUCUGGUUAAGCAUACGAUCACGUUCAAUGACCCGAAAUCAGGUAAGACGGUUACUAGGGACAUUAAGAUUGAACCAACCACCGGACAGAUUGUGCUGAAGAACCAGGUCAAUC
.(((((((((((((...(((((((((..((((....(((.(....).))).....((((....((..((.......))..))))))...)))).))))))).))...))))))))))))) ( -39.00)
>DroVir_CAF1 54557 120 + 1
AAAUCGAUUUGGUCAAGCACACAAUCACCUUCACGGACCCCAAGUCGGGCAAGACGGUAACACGCGACAUCAAAAUCGAGCCAGCCACCGGACAGAUUGUGUUGAAGAACCAGAUCAAUC
.....((((((((....(((((((((....((.(((.......(((......)))(((......(((........))).....))).)))))..))))))).))....)))))))).... ( -33.00)
>DroGri_CAF1 63393 120 + 1
AGAUUGAUUUGGUGAAGCACACCAUAACCUACACCGAUCCCAAGUCCGGCAAAACGGUAACCCGUGACAUUAAAAUCGAGCCAUCAACGGGCCAGAUUGUGCUGAAGAACCAAGUCAAUC
.((((((((((((..(((((.......................((((((............))).))).....((((..(((.......)))..))))))))).....)))))))))))) ( -36.20)
>DroWil_CAF1 79523 120 + 1
AGAUUGAUUUGGUGAAGCAUACAAUCACUUUCAAUGAUCCCAAAUCGGGUAAGACGGUGACCCGUGAUAUUAAGAUUGAACCAACAACUGGCCAAAUUCUGCUCAAGAAUCAAAUCAACC
...((((((((((..((((..(((((............(((.....)))....((((....))))........)))))..(((.....)))........)))).....)))))))))).. ( -26.50)
>DroMoj_CAF1 67792 120 + 1
AAAUCGAUUUGGUUAAGCACACAAUCACCUUUACCGAUCCCAAGUCGGGCAAAUCGGUGACAAGGGACAUUAAGAUCGAGCCAAGCACCGGACAGAUCGUGCUGAAGAACCAAGUCAACC
.....(((((((((.(((((....((.((((((((((((((.....)))...))))))))..)))))......((((...((.......))...)))))))))....))))))))).... ( -43.70)
>DroAna_CAF1 52051 120 + 1
AGAUCGAUCUGGUCAAGCACACGAUCACCUUCAACGACCCCAAGUCGGGCAAGACCGUGACCCGGGACAUCAAGAUCGAGCCCGCCACGGGACAGAUCGUGCUGAAGAACCAGGUGAACC
...((.(((((((....(((((((((..(((...((((.....))))...))).(((((...((((...((......)).)))).)))))....))))))).))....)))))))))... ( -43.00)
>consensus
AGAUCGAUUUGGUCAAGCACACAAUCACCUUCAACGACCCCAAGUCGGGCAAGACGGUGACCCGGGACAUUAAGAUCGAGCCAACCACCGGACAGAUUGUGCUGAAGAACCAAGUCAACC
.....((((((((..(((((..................(((.....)))........................((((...((.......))...))))))))).....)))))))).... (-22.75 = -21.53 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 14,755,323 – 14,755,443
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.72
Mean single sequence MFE -38.26
Consensus MFE -23.71
Energy contribution -23.24
Covariance contribution -0.47
Combinations/Pair 1.49
Mean z-score -1.58
Structure conservation index 0.62
SVM decision value 0.03
SVM RNA-class probability 0.550977
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14755323 120 - 20766785
GAUUGACCUGGUUCUUCAGCACAAUCUGUCCGGUGGUUGGUUCAAUCUUAAUGUCCCUAGUAACCGUCUUACCUGAUUUCGGGUCAUUGAACGUGAUCGUAUGCUUAACCAGAUCAAUCU
((((((.((((((....(((((((((........)))))(.(((...((((((.(((..((((.....))))..(....)))).))))))...))).)...)))).)))))).)))))). ( -34.00)
>DroVir_CAF1 54557 120 - 1
GAUUGAUCUGGUUCUUCAACACAAUCUGUCCGGUGGCUGGCUCGAUUUUGAUGUCGCGUGUUACCGUCUUGCCCGACUUGGGGUCCGUGAAGGUGAUUGUGUGCUUGACCAAAUCGAUUU
(((((((.(((((.....((((((((...((((((((..((.((((......)))).)))))))).((..((((......))))....)).)).))))))))....))))).))))))). ( -42.00)
>DroGri_CAF1 63393 120 - 1
GAUUGACUUGGUUCUUCAGCACAAUCUGGCCCGUUGAUGGCUCGAUUUUAAUGUCACGGGUUACCGUUUUGCCGGACUUGGGAUCGGUGUAGGUUAUGGUGUGCUUCACCAAAUCAAUCU
((((((.(((((.....((((((..((((((((....((((..(((......)))((((....))))...))))....)))).))))............))))))..))))).)))))). ( -39.24)
>DroWil_CAF1 79523 120 - 1
GGUUGAUUUGAUUCUUGAGCAGAAUUUGGCCAGUUGUUGGUUCAAUCUUAAUAUCACGGGUCACCGUCUUACCCGAUUUGGGAUCAUUGAAAGUGAUUGUAUGCUUCACCAAAUCAAUCU
((((((((((......(((((......((((((...))))))(((((........((((....))))....(((.....)))............)))))..)))))...)))))))))). ( -29.50)
>DroMoj_CAF1 67792 120 - 1
GGUUGACUUGGUUCUUCAGCACGAUCUGUCCGGUGCUUGGCUCGAUCUUAAUGUCCCUUGUCACCGAUUUGCCCGACUUGGGAUCGGUAAAGGUGAUUGUGUGCUUAACCAAAUCGAUUU
((((((.((((((....(((((((((.(((........)))..)))).....(((((((...((((((...(((.....))))))))).)))).)))...))))).)))))).)))))). ( -37.60)
>DroAna_CAF1 52051 120 - 1
GGUUCACCUGGUUCUUCAGCACGAUCUGUCCCGUGGCGGGCUCGAUCUUGAUGUCCCGGGUCACGGUCUUGCCCGACUUGGGGUCGUUGAAGGUGAUCGUGUGCUUGACCAGAUCGAUCU
((((...((((((.....((((((((.(.((((...)))))...((((((((((((((((((..((.....)).))))))))).)))).)))))))))))))....))))))...)))). ( -47.20)
>consensus
GAUUGACCUGGUUCUUCAGCACAAUCUGUCCGGUGGUUGGCUCGAUCUUAAUGUCCCGGGUCACCGUCUUGCCCGACUUGGGAUCGGUGAAGGUGAUUGUGUGCUUAACCAAAUCAAUCU
((((((.((((((.....((((((((...((((...))))...((((((((.(((...................))))))))))).........))))))))....)))))).)))))). (-23.71 = -23.24 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:53 2006