| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,740,760 – 14,740,851 |
| Length | 91 |
| Max. P | 0.629084 |
| Location | 14,740,760 – 14,740,851 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 83.47 |
| Mean single sequence MFE | -27.94 |
| Consensus MFE | -19.74 |
| Energy contribution | -20.43 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14740760 91 - 20766785 UAAAGGU-U--UUCAUACUUAUCGCUGCCCAGCAGCCUGUAGGUGCGACUCAUGUCCUUGAUCUCCUGCGUCACCUCGCCAUUGCGCAACGACU ...(((.-.--.((((((((((.(((((...)))))..))))))).(((....)))..)))...)))..(((....(((....)))....))). ( -22.90) >DroVir_CAF1 38453 91 - 1 AUUGGAU-A--UACUUACUUAUCGCUGCCCAGCAACCGAUAGGUUCGACUCAUGUCCUUGAUCUCUUGCGUCACUUCGCCAUUGCGCAGAGACU ...((((-(--(....((((((((.(((...)))..)))))))).......))))))....(((((.((((............))))))))).. ( -23.70) >DroGri_CAF1 46392 90 - 1 ---GAUG-UAUUACUCACUUAUCGCUGCCCAGCAGCCGAUAGGUGCGACUCAUGUCCUUGAUCUCCUGCGUGAUCUCGCCGUUGCGCAGAGACU ---((((-(....(.(((((((((((((...)))).))))))))).)....))))).....((((.((((..((......))..)))))))).. ( -31.80) >DroMoj_CAF1 51452 90 - 1 ---GCUU-AGUCACUUACUUAUCGCUGCCCAGCAGCCGAUAGGUGCGACUCAUGUCCUUAAUCUCCUGCGUCACCUCGCCGUUGCGCAGAGACU ---....-((((...(((((((((((((...)))).))))))))).(((....))).........((((((.((......)).)))))).)))) ( -30.10) >DroAna_CAF1 37970 91 - 1 UAUACCA-A--UCCUUACUUGUCGCUGCCCAGCAGCCGGUAGGUCCGACUCAUGUCCUUGAUCUCCUGCGUCACCUCGCCAUUGCGCAAGGACU .......-.--.....((((..((((((...)))).))..)))).........(((((((.......(((......))).......))))))). ( -25.14) >DroPer_CAF1 42409 92 - 1 CAUGGAUCG--UGCUUACUUGUCGCUGCCCAGCAGCCGGUAGGUGCGACUCAUGUCCUUGAUCUCCUGCGUCACCUCACCAUUGCGCAGCGACU ((((..(((--..((((((.((.(((....))).)).))))))..)))..)))).........((((((((............)))))).)).. ( -34.00) >consensus _AUGGAU_A__UACUUACUUAUCGCUGCCCAGCAGCCGAUAGGUGCGACUCAUGUCCUUGAUCUCCUGCGUCACCUCGCCAUUGCGCAGAGACU ...............(((((((((((((...)))).))))))))).(((....))).....((((.(((((............))))))))).. (-19.74 = -20.43 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:47 2006