Locus 4478

Sequence ID 2R_DroMel_CAF1
Location 14,730,511 – 14,730,620
Length 109
Max. P 0.813312
window7163

overview

Window 3

Location 14,730,511 – 14,730,620
Length 109
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 91.65
Mean single sequence MFE -36.20
Consensus MFE -29.68
Energy contribution -30.40
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -1.59
Structure conservation index 0.82
SVM decision value 0.66
SVM RNA-class probability 0.813312
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14730511 109 + 20766785
GCUUCACUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCACUUUGCCGGAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGA------UGACGAGGUGAUGCUGGAGGAGAGGGC
((......))..........(((((.(..(((((((((((((((.((.((((..((((......))))(....)..))))..------)).))))))))))).))))..)))))) ( -40.50)
>DroSec_CAF1 35762 109 + 1
GCUUCGAUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCAGUUUGCCGGAUCGAAGCUCAAACAAGAGUGGAAACAAUGAUGA------UGACGAGGUGAUGCUGGAGGAGCGGGC
(((((((.(((........)))...))...(((((((((.((((.((.((((..((((......))))(....)..))))..------)).)))).)))))).)))))))).... ( -33.30)
>DroSim_CAF1 38493 109 + 1
GCUUCGAUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCAGUUUGCCGGAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGA------UGACGAGGUGAUGCUGGAGGAGGGGGC
((......))..........((((((...((((((((((.((((.((.((((..((((......))))(....)..))))..------)).)))).)))))).))))..)))))) ( -35.60)
>DroEre_CAF1 35710 109 + 1
GCUUCGCUGCUUUCAAUUCAGUCCUUCGAUUCCGCAUCACUUUGCCGGAUCGAAGCUCAAACAAGAGCGAAAACAAUGAUGA------UGAUGAGGUGAUAAAGGAGGAGCGGGC
(((.((((.((((((.(((((((.((((((((.(((......))).))))))))((((......))))............))------)..)))).))).....))).))))))) ( -33.70)
>DroYak_CAF1 36385 115 + 1
GCUUCGCUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCACUUUGCCGAAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGAUGUCGAUGAUGAGGUGAUGAAGGAGGUGCGGGC
((((((((.((((((..(((.(((((((((((.(((......))).))))))).((((......))))(....)..................))))))))))))).)))).)))) ( -37.90)
>consensus
GCUUCGCUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCACUUUGCCGGAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGA______UGACGAGGUGAUGCUGGAGGAGCGGGC
(((.((((.((((....(((.(((((((((((.(((......))).))))))).((((......))))(....)..................)))))))....)))).))))))) (-29.68 = -30.40 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:44 2006