Locus 4469

Sequence ID 2R_DroMel_CAF1
Location 14,695,167 – 14,695,274
Length 107
Max. P 0.983953
window7149

overview

Window 9

Location 14,695,167 – 14,695,274
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 86.82
Mean single sequence MFE -21.78
Consensus MFE -18.02
Energy contribution -18.90
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -2.34
Structure conservation index 0.83
SVM decision value 1.96
SVM RNA-class probability 0.983953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14695167 107 + 20766785
UUACAUAUCUCAAUGUGGAGUAUCAUUAUUGCUCACCACGCCACAUAAAUAAUAAAAUUGUAUGUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAGGAGGAAUGU
..((((.((((..(((((((((.......)))))...((((.((((((((......))).)))))))))...(((((.....)))))....))))...)))).)))) ( -22.20)
>DroSec_CAF1 556 96 + 1
UCACAUUUCUCAAUUUAGAGUAUCAUUAAUGCUCACCAAGCCACAUAAAU-----------ACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU
..((((((((((.((((((((((.....))))))................-----------...((((((.........))))))........)))))))))))))) ( -23.00)
>DroSim_CAF1 555 107 + 1
UCACUUUUCUCAAUUUAGAGUAUCAUUAAUGCUCACCAAGCGACAUAAAUAAUAAAAUUGUACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU
..((.(((((((.((((((((((.....)))))).....((((((.............)))..((((((....))))))..))).........))))))))))).)) ( -19.12)
>DroEre_CAF1 512 107 + 1
UCACAUUUCUCAAUAUAGAGUAACAUUAAUGCCCGCCAAGCCACAUAAGUAAUAAAAUGUUUCUUGCGUUAGAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU
..((((((((((.....(((.((((((...((.......)).((....)).....)))))).)))(((((.........))))).............)))))))))) ( -20.10)
>DroYak_CAF1 546 107 + 1
UCACAUUUCUCAAUAUGGAGUAUCAUUAAUAUUCGCCAAGCCACAUAAGUAAUAACAUGUUACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU
..((((((((((.((((((((((.....))))))............(((((((.....)))))))(((((.........))))).......))))..)))))))))) ( -24.50)
>consensus
UCACAUUUCUCAAUAUAGAGUAUCAUUAAUGCUCACCAAGCCACAUAAAUAAUAAAAUGGUACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU
..((((((((((.....((((((.....))))))..............................((((((.........))))))............)))))))))) (-18.02 = -18.90 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:31 2006