Locus 4452

Sequence ID 2R_DroMel_CAF1
Location 14,639,868 – 14,639,969
Length 101
Max. P 0.955596
window7113

overview

Window 3

Location 14,639,868 – 14,639,969
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 90.99
Mean single sequence MFE -20.96
Consensus MFE -16.65
Energy contribution -17.53
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -2.16
Structure conservation index 0.79
SVM decision value 1.46
SVM RNA-class probability 0.955596
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14639868 101 - 20766785
GUGCACAUAUCUCUAUAUAAUCGCGUUUUUCUUCAUAUCAGGAAAUUGAAAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCAAC
((((..((((....)))).(((((((((((((((.......)))...))))))))))))..)))).......((((((((.....))).)))))....... ( -25.30)
>DroSec_CAF1 2635 101 - 1
ACGCACAUAUCUCUAUAUAAUCGCGUUUUUCCUCAUAUCAGGAAAUUGAAAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCACC
..((((.............((((((((((((.((.......))....)))))))))))).(((((...((..........))...)))))))))....... ( -21.90)
>DroSim_CAF1 2504 101 - 1
ACGCACAUAUCUCUAUAUAAUCGCGUUUUUCCUCAUAUCAGGAAAUUGAAAUAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCACC
..((((..............(((....((((((......)))))).)))....(((((((........)))))))..........))))((((....)))) ( -21.40)
>DroEre_CAF1 2605 101 - 1
ACGCACAUACCUCCAAACAAUCGAGUUUUUCUUUAUAUCAAGAAAUGGAAAAAAGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGCUGUAAUCACC
.(((((.....(((((((......)))((((((......)))))))))).....((((((........))))))...........)))))........... ( -19.20)
>DroYak_CAF1 2538 101 - 1
ACGCACAUAACUCUAUGCAAUCGAGUUUUUUCCCAUAUCAGUAAAUUGAGAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGCUGUAAUCACC
.(((((..(((((.........))))).((((.((...........)).))))(((((((........)))))))..........)))))........... ( -17.00)
>consensus
ACGCACAUAUCUCUAUAUAAUCGCGUUUUUCCUCAUAUCAGGAAAUUGAAAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCACC
..((((.............((((((((((((................)))))))))))).(((((...((..........))...)))))))))....... (-16.65 = -17.53 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:57 2006