Locus 4450

Sequence ID 2R_DroMel_CAF1
Location 14,632,070 – 14,632,174
Length 104
Max. P 0.665178
window7109

overview

Window 9

Location 14,632,070 – 14,632,174
Length 104
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 90.26
Mean single sequence MFE -18.47
Consensus MFE -16.16
Energy contribution -16.27
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.87
SVM decision value 0.28
SVM RNA-class probability 0.665178
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14632070 104 - 20766785
UAAACAUUCCGAAAACGAUUUAGAUUUAAGUU-AAUAUUUCCGAACGAUUUAGAUUUAAGUCAACAUUUAAGAAAUGCUUUCGUGUUUGUAUUUAUACGUUUCAC
...(((..((((((..((((((((((((((((-.............))))))))))))))))..((((.....)))).))))).)..)))............... ( -18.92)
>DroSec_CAF1 271041 98 - 1
AAAACAUUCCGAAAACAAUUUAGAUUUAAGUUUAAU-------AACGAUUUAGAUUUAAGUCAACAUUUCGAAAAUGCUUUCGUGUUUGUAUUUAUACGUUUCAC
...(((..((((((........(((((((((((((.-------......)))))))))))))..((((.....)))).))))).)..)))............... ( -17.10)
>DroSim_CAF1 268001 98 - 1
AAAACAUUCCGAAAACAAUUUAGACUUAAGUUUAAU-------AACGAUUUAGAUUUAAGUCAACAUUUCGAAAAUGCUUUCGUGUUUGUAUUUAUACGCUUCAC
...(((..((((((........(((((((((((((.-------......)))))))))))))..((((.....)))).))))).)..)))............... ( -19.40)
>consensus
AAAACAUUCCGAAAACAAUUUAGAUUUAAGUUUAAU_______AACGAUUUAGAUUUAAGUCAACAUUUCGAAAAUGCUUUCGUGUUUGUAUUUAUACGUUUCAC
...(((..((((((........(((((((((((((..............)))))))))))))..((((.....)))).))))).)..)))............... (-16.16 = -16.27 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:53 2006