| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,623,815 – 14,623,911 |
| Length | 96 |
| Max. P | 0.979905 |
| Location | 14,623,815 – 14,623,911 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 78.61 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -19.30 |
| Energy contribution | -20.74 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14623815 96 - 20766785 AGCAGUGGCACGUAAAAUGUGCAACAGGUGGCAAAUACCUGGAA-AAAG-CAAUGGCCAUGUGAUUAAUUAAUAAGAG--CGUUCAUGGUCGAGAUCGUU- .((....((((((...))))))..((((((.....))))))...-...)-)..((((((((.................--....))))))))........- ( -25.20) >DroSec_CAF1 262644 93 - 1 AGCAGUGGCACGUAAAAUGUGCAACAGGUGGCAAAUACCUGGAAAAAAG-CAACGGCCAUGUGAUUAAUUAAUAAG------UACAUCGUCGAGAUCCUU- .((....((((((...))))))..((((((.....)))))).......)-)..((((.(((((.(((.....))).------))))).))))........- ( -24.90) >DroSim_CAF1 259563 96 - 1 AGCAGUGGCACGUAAAAUGUGCAACAGGUGGCAAAUACCUGGAA-AAAG-CAACGGCCAUGUGAUUAAUUAAUAAGAG--CGUACAUGGUCGAGAUCCGU- .((....((((((...))))))..((((((.....))))))...-...)-)..((((((((((.(((.....)))...--..))))))))))........- ( -29.90) >DroEre_CAF1 265240 94 - 1 AGCAGUGGCACGUAAAAUGUGCAACAGGUGGCAAAUACCUGCAA-AAAGG-AACGGCCAUGUGAUUAA--AAUAACAG--UCUGCAUGGUCGAGGUCCUU- .((.((.((((((...)))))).))(((((.....)))))))..-.((((-(.(((((((((((((..--......))--)).)))))))))...)))))- ( -34.50) >DroYak_CAF1 272223 97 - 1 AGCAGUGGCACGUAAAAUGUGCAACAGGUGGCAAAUACCUGGAA-AAAGGCAACGGCCAUGUGAUUAA--AAUAACAGCGUUCGCAUGGUCGAGGUCCUU- .......((((((...))))))..((((((.....))))))...-.(((((..(((((((((((....--...........)))))))))))..).))))- ( -34.96) >DroMoj_CAF1 423135 84 - 1 AGCAGUGGCACAUAGAAAGUGCAACAGGUGGCAAAUACCUAAAU-GAGGGAAAAUUCUCUUUG--AAACUCAUCCACA--------CAGUCAA------UG ....(((((((.......))))...(((((.....)))))....-((((((....))))))..--...........))--------)......------.. ( -16.30) >consensus AGCAGUGGCACGUAAAAUGUGCAACAGGUGGCAAAUACCUGGAA_AAAG_CAACGGCCAUGUGAUUAAUUAAUAAGAG____UACAUGGUCGAGAUCCUU_ .......((((((...))))))..((((((.....))))))............((((((((((...................))))))))))......... (-19.30 = -20.74 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:51 2006