| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,560,706 – 2,560,826 |
| Length | 120 |
| Max. P | 0.831634 |
| Location | 2,560,706 – 2,560,826 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.48 |
| Mean single sequence MFE | -33.95 |
| Consensus MFE | -24.92 |
| Energy contribution | -25.55 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2560706 120 + 20766785 AACUUCGUGUUUAGAGCCACCUCUCUAAACAUUUUACUGAAGUUGAGCGAUAGUUUUUUUCAGUGAUGUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAACGAAUUGCGCA ...(((((....((((((....(((((((((((..(((((((..((((....)))).)))))))))))))(((.((..(......)..))))))))))))))))....)))))....... ( -38.90) >DroSec_CAF1 39174 119 + 1 CACUUCGUUUUUGGGUUAACCUA-AAAACCACUUUACUGAAGUUGAACGAUCGUUUUGUUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAAUUGCGCA ......(((((((((....))))-)))))....((((((((...((((....))))..))))))))(((.(((.((..(......)..))))).)))(.((..(((....)))..)).). ( -34.50) >DroSim_CAF1 36032 119 + 1 CACUUCGUUUUUAGGUUAACCUA-AAAACCACUUUACUGAAGUUGAACGAUCGUUUUGUUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAAUUGCGCA ......(((((((((....))))-)))))....((((((((...((((....))))..))))))))(((.(((.((..(......)..))))).)))(.((..(((....)))..)).). ( -34.80) >DroEre_CAF1 34040 119 + 1 CACGUCGUGUUUAGAGUCACCUCUCUAAAAACUUUAC-GAAAUUAAAUGAUCGUUUCGCUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAGUUGCGCA (((...((.(((((((......))))))).))....(-(((((.........))))))....))).(((.(((.((..(......)..))))).)))(.((..(((....)))..)).). ( -27.60) >consensus CACUUCGUGUUUAGAGUAACCUA_AAAAACACUUUACUGAAGUUGAACGAUCGUUUUGUUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAAUUGCGCA ....((((((..(((((..((((..........((((((((...((((....))))..))))))))....(((.((..(......)..)))))..)))))))))..))))))........ (-24.92 = -25.55 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:42 2006