Locus 4434

Sequence ID	2R_DroMel_CAF1
Location	14,574,837 – 14,574,928
Length	91
Max. P	0.999604

overview

Window 6

Location	14,574,837 – 14,574,928
Length	91
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	92.62
Mean single sequence MFE	-19.85
Consensus MFE	-17.84
Energy contribution	-18.24
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-2.47
Structure conservation index	0.90
SVM decision value	3.77
SVM RNA-class probability	0.999604
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14574837 91 + 20766785
CC---ACUAGCUCCACAACCACCACCGCAUUAUCAUCAUCACUUGCUGCUGUGGCAUCCACAUCCUCGCCUCCGGAUGCCGGAAAAUUUCAGCU
..---...((((.........((((.(((.((...........)).))).))))..(((.(((((........)))))..))).......)))) ( -19.30)
>DroSec_CAF1 207233 88 + 1
CC---ACUAGCUACACAACCACCACCGCAUUAUC---AUCACUUGCUGCUGUGGCAUCCACAUCCUCGCCUCUGGAUGCCGGAAAAUUCCAGCU
..---...((((.........((((.(((.((..---......)).))).))))..(((.(((((........)))))..))).......)))) ( -21.50)
>DroSim_CAF1 208689 91 + 1
CC---ACUAGCUCCACAACCACCACCGCAUUAUCAUCAUCACUUGCUGCUGUGGCAUCCACAUCCUCGCCUCCGGAUGCCGGAAAAUUCCAGCU
..---...((((.........((((.(((.((...........)).))).))))..(((.(((((........)))))..))).......)))) ( -19.30)
>DroEre_CAF1 213987 91 + 1
CC---ACCAGCUCCACGACCACCACCACAUUAUCAUCCUCACUUGCUGCUGUGGCAUCCACAUCCCCGCCGCCGGAUGCCGGAAAAUUCCAGCU
.(---(.((((.................................)))).)).(((((((..............)))))))(((....))).... ( -18.05)
>DroYak_CAF1 221149 94 + 1
CCAGCACCAGCUCCACAACCACCACCGCAUUAUCAUCCUCACUUGCAGCUGUGGCAUCCACAUCCUCGCCUCCGGAUGCCGGAAAAUUCCAGCU
..(((..(((((..............(((..............)))))))).(((((((..............)))))))(((....))).))) ( -21.11)
>consensus
CC___ACUAGCUCCACAACCACCACCGCAUUAUCAUCAUCACUUGCUGCUGUGGCAUCCACAUCCUCGCCUCCGGAUGCCGGAAAAUUCCAGCU
........((((.........((((.(((.((...........)).))).))))..(((.(((((........)))))..))).......)))) (-17.84 = -18.24 +   0.40)

alignment

secondary structure

dotplot

Window 7

Location	14,574,837 – 14,574,928
Length	91
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	92.62
Mean single sequence MFE	-28.84
Consensus MFE	-24.78
Energy contribution	-24.62
Covariance contribution	-0.16
Combinations/Pair	1.04
Mean z-score	-1.38
Structure conservation index	0.86
SVM decision value	0.50
SVM RNA-class probability	0.758744
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14574837 91 - 20766785
AGCUGAAAUUUUCCGGCAUCCGGAGGCGAGGAUGUGGAUGCCACAGCAGCAAGUGAUGAUGAUAAUGCGGUGGUGGUUGUGGAGCUAGU---GG
((((.......((((.(((((........)))))))))..(((((((.((.(.((((.......)).)).).)).)))))))))))...---.. ( -26.80)
>DroSec_CAF1 207233 88 - 1
AGCUGGAAUUUUCCGGCAUCCAGAGGCGAGGAUGUGGAUGCCACAGCAGCAAGUGAU---GAUAAUGCGGUGGUGGUUGUGUAGCUAGU---GG
.((((((....))))))..(((..(((....(((..(..(((((.(((.((.....)---)....))).)))))..)..))).)))..)---)) ( -28.30)
>DroSim_CAF1 208689 91 - 1
AGCUGGAAUUUUCCGGCAUCCGGAGGCGAGGAUGUGGAUGCCACAGCAGCAAGUGAUGAUGAUAAUGCGGUGGUGGUUGUGGAGCUAGU---GG
.(((((.....((((.(((((........)))))))))..(((((((.((.(.((((.......)).)).).)).)))))))..)))))---.. ( -27.90)
>DroEre_CAF1 213987 91 - 1
AGCUGGAAUUUUCCGGCAUCCGGCGGCGGGGAUGUGGAUGCCACAGCAGCAAGUGAGGAUGAUAAUGUGGUGGUGGUCGUGGAGCUGGU---GG
.((((((....))))))..(((((..(.(.(((.....(((((((....((........))....)))))))...))).).).))))).---.. ( -29.80)
>DroYak_CAF1 221149 94 - 1
AGCUGGAAUUUUCCGGCAUCCGGAGGCGAGGAUGUGGAUGCCACAGCUGCAAGUGAGGAUGAUAAUGCGGUGGUGGUUGUGGAGCUGGUGCUGG
.((((((....))))))(((((.(........).))))).(((((((..(......(.((....)).)....)..)))))))(((....))).. ( -31.40)
>consensus
AGCUGGAAUUUUCCGGCAUCCGGAGGCGAGGAUGUGGAUGCCACAGCAGCAAGUGAUGAUGAUAAUGCGGUGGUGGUUGUGGAGCUAGU___GG
((((.......((((.(((((........))))))))).(((((.((.(((..............))).)).))))).....))))........ (-24.78 = -24.62 +  -0.16)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:32 2006