| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,574,297 – 14,574,394 |
| Length | 97 |
| Max. P | 0.660008 |
| Location | 14,574,297 – 14,574,394 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.91 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -15.38 |
| Energy contribution | -16.63 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14574297 97 - 20766785 UAUU---GUAGAUUUUUUU--CCACCAGAAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGGGUUCUAGGUGUGCUCGGCACAAAGUUUGUACUGA ....---............--.........((((.((((...((((((((((((......))))))))))))....(((((...)))))....)))))))). ( -22.00) >DroSec_CAF1 206703 97 - 1 UAUU---GGAGAUUUUUUU--UCACCAGCAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGAGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ..((---((.((.......--)).))))..((((.((((...((((((((((((......))))))))))))...((((.....)))).....)))))))). ( -25.00) >DroSim_CAF1 208139 97 - 1 UAUU---GUAGAUUUUUUU--UCACCAGCAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGAGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ....---(((.(..((((.--...(.((((((.(((......((((((((((((......))))))))))))))).)))))).)....))))..).)))... ( -22.90) >DroEre_CAF1 213476 96 - 1 UUUC---GGAGAUUUUUU---GCACCGAAAUAGUUACAAUUUGAACUUACUUUAUUUUAUUGGAGUGGGUUCUAGGUGUGCUCGACGCAAAGUUUGUACUGA ..((---(((.(..((((---((..(((....((.(((....((((((((((((......))))))))))))....))))))))..))))))..).).)))) ( -26.20) >DroYak_CAF1 220614 99 - 1 UAUC---GGAGAUUUUUUUUGCCACGGGAAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGGGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ..((---((..((...(((((...((((......((((....((((((((((((......))))))))))))....))))))))...)))))...)).)))) ( -22.30) >DroAna_CAF1 244286 83 - 1 UAUUUUCGGAUUUUUUAUUUUUC-----------GAUUAUUUGAACUUACUUUUUU----UGGAGGGGG----AUGUGUGCUCGGCACAAGGUUUCUAGCAG ...(((((((..........(((-----------((....))))).........))----)))))((..----((.(((((...)))))..))..))..... ( -13.61) >consensus UAUU___GGAGAUUUUUUU__UCACCAGAAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGGGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ..............................((((.((((...((((((((((((......))))))))))))...((((.....)))).....)))))))). (-15.38 = -16.63 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:30 2006