| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,525,029 – 14,525,119 |
| Length | 90 |
| Max. P | 0.859531 |
| Location | 14,525,029 – 14,525,119 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.03 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -11.50 |
| Energy contribution | -11.75 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14525029 90 + 20766785 CAA---AUUAUGGGUGUG-CACU-GAAUGUGUG--UGCGUGUGUGUGCAACGCAUGCAGAAUUUAAAGCACACGAACAAUUUGUUAAAGU-GCCCCGU---------------- ...---...(((((...(-((((-...((((((--(((((((((.....))))))))..........)))))))(((.....)))..)))-)))))))---------------- ( -29.40) >DroPse_CAF1 154052 113 + 1 CAUUUAACCGCGAGUUUG-UGCGUGCGUGUGUGUUCACAUGUGUGUGCUUUGCAUGCAGAAUUUAAGGCAUAGCAACCAUUUUUUAAAGUAGCCCCAUAUAUUCUGUCCUUCCU .........(((((...(-..((..((((((....))))))..))..))))))..(((((((.((.((....((.((...........)).)).)).)).)))))))....... ( -28.40) >DroSec_CAF1 157333 84 + 1 CAA---AUUAUGGGUGUG-UGCU-GAAUGUGUG--------UGUGUGCAACGCAUGCAGAAUUUAAAGCACAAGAAAAAUUUGUUAAAGU-GCCCCGU---------------- ...---...(((((.(((-((((-...((((((--------(((.....)))))))))........))))).......((((....))))-)))))))---------------- ( -23.00) >DroSim_CAF1 158431 86 + 1 CAA---AUUAUGGGUGUG-UGCU-UAAUGUGUG--U----GUGUGUGCAACGCAUGCAGAAUUUAAAGCACAAGAACAAUUUGUUAAAGU-GCCCCGU---------------- ...---...(((((.(((-((((-((((.((((--(----((((.....)))))))))..)))..))))))...(((.....))).....-)))))))---------------- ( -24.80) >DroEre_CAF1 163445 81 + 1 CAA---A-UAUGGCUGUG-UGUU---GUAUGU--------GUGUGUGCAACGCAUGCAGAAUUUAAAGCACAAGAAUAAUUUGUUAAAGU-GCCCCGU---------------- ...---.-.(((((((((-((((---((((..--------....)))))))))..))))........((((...(((.....)))...))-)).))))---------------- ( -20.20) >DroYak_CAF1 161382 85 + 1 GAA---AUUAUGGGUGUGCUGUG-GAAUGUGU--------GUGUGUGCAACGCAUGCAGAAUUUAAAGCACAGAAAUAAUUUGUUAAAGU-GCCUCGU---------------- .((---(((((...((((((.((-((.(.(((--------(((((.....)))))))).).)))).))))))...)))))))........-.......---------------- ( -24.20) >consensus CAA___AUUAUGGGUGUG_UGCU_GAAUGUGUG_______GUGUGUGCAACGCAUGCAGAAUUUAAAGCACAAGAACAAUUUGUUAAAGU_GCCCCGU________________ ...........((((............(((((.........(((((((...))))))).........)))))......((((....)))).))))................... (-11.50 = -11.75 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:14 2006