| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,550,740 – 2,550,844 |
| Length | 104 |
| Max. P | 0.929618 |
| Location | 2,550,740 – 2,550,844 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.42 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -14.17 |
| Energy contribution | -14.07 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2550740 104 + 20766785 AGACUCUUUUUUUAAAUUGGAGGAA----------------AAAACUCCUUCCUUUUAGCGUUGCAAUUGCAACCUCGCACUGUUGGUUGAUUUUUUGUAGCGUCUUCUAAGUUUAACGU (((((.......((((..((((((.----------------.....))))))..))))(((((((((...(((((..........))))).....)))))))))......)))))..... ( -26.20) >DroSec_CAF1 28934 114 + 1 ------AUUUUUUAAAUUGGAGGAUGUUUUCCUCGCAAUUCAAAAUGCCUUCCUCCGCGCGUUGCAAUUGCAACAGCGCAAUGUUGCUUAAUUUUUUUUAACGUCUGUUAAGUUUAACGU ------...((((.((((((((((.....))))).))))).))))...........(((((((((....))))).)))).((((((((((((..............)))))))..))))) ( -31.04) >DroSim_CAF1 25549 113 + 1 ------GUUUUUUAAGUUGGAGGAUGUUUUCCUCGCAAUUCAAAAUUCCUUCCUUCGCGCGUUGCAAUUGUAACCUCGCAAUGUUGCUUAAUUU-CUUUAACGUCUGUUAAGUUUAACGU ------(..((((.((((((((((.....))))).))))).))))..)........(((.(((((....)))))..))).((((((((((((..-(......)...)))))))..))))) ( -25.80) >consensus ______AUUUUUUAAAUUGGAGGAUGUUUUCCUCGCAAUUCAAAAUUCCUUCCUUCGCGCGUUGCAAUUGCAACCUCGCAAUGUUGCUUAAUUUUUUUUAACGUCUGUUAAGUUUAACGU ..................((((((..........................))))))..(((((((((((((......)))..))))).........((((((....))))))...))))) (-14.17 = -14.07 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:39 2006