Locus 4414

Sequence ID 2R_DroMel_CAF1
Location 14,518,788 – 14,518,887
Length 99
Max. P 0.842911
window7057

overview

Window 7

Location 14,518,788 – 14,518,887
Length 99
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 78.54
Mean single sequence MFE -24.23
Consensus MFE -9.71
Energy contribution -11.05
Covariance contribution 1.33
Combinations/Pair 1.20
Mean z-score -2.73
Structure conservation index 0.40
SVM decision value 0.76
SVM RNA-class probability 0.842911
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14518788 99 - 20766785
-CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCAGGCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAUCUCGAUUU-ACUC--AAAAAAAAUUGGCUGAA
-......((((....((.....))(((((((....(((((...(((((((.(....)))))))-))))))....)))..)-))).--...........)))).. ( -26.20)
>DroSec_CAF1 151111 97 - 1
-CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCAGGCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAGCUUGCUUU-ACUC--AAAAAAA--UGGCUGAA
-......((((.((((((((.(((......)))..(((((...(((((((.(....)))))))-)))))).).)))))))-...(--(......--)))))).. ( -27.70)
>DroSim_CAF1 152263 97 - 1
-CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCAGGCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAGUUCGCUUU-GCAC--AAAAAAA--UGGCUUAA
-........(((((.(((((.(((......)))..(((((...(((((((.(....)))))))-)))))).))).)))))-))..--.......--........ ( -26.10)
>DroEre_CAF1 156611 95 - 1
---AGUACAGCAAAAGCAACAGGCAGUAUCGUCC-GCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAGCUUGUUUU-ACUUU-AAAAAAA--UGCCUGAA
---......((....))..(((((..........-(((((...(((((((.(....)))))))-)))))).....(((((-.....-...))))--)))))).. ( -25.00)
>DroYak_CAF1 154967 99 - 1
-CGAAUACAGCAAAAGCAACAGGCAUUAUCAUCG-GAAGCCCAAAAAAGUAGGCAACACUUUUUUCCUACAGCUUGCUUU-ACUUUCAAAAAAA--UGACUCAA
-.(((...((((..(((....(((.((.......-)).))).((((((((.(....)))))))))......)))))))..-...))).......--........ ( -16.80)
>DroAna_CAF1 165898 87 - 1
UCCAGAAAAGCGAAAGCAUCAGGCGGUGUGG-----C-----AGUGAGGCAGGCAACACUUAU-UGCUGCUCUUUGAUUUUAC----AAAAAAA--GAAGUAUA
.........((....))((((((.((.(..(-----(-----((((((...(....).)))))-)))..))))))))).....----.......--........ ( -23.60)
>consensus
_CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCA_GCAGCCCAAAAAAGUAGGCAACACUUUU_UGCUGCAGCUUGCUUU_ACUC__AAAAAAA__UGGCUGAA
............(((((((...((((((................((((((.(....))))))).))))))...)))))))........................ ( -9.71 = -11.05 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:03 2006