Locus 441

Sequence ID 2R_DroMel_CAF1
Location 2,546,211 – 2,546,302
Length 91
Max. P 0.534470
window847

overview

Window 7

Location 2,546,211 – 2,546,302
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -20.08
Consensus MFE -14.53
Energy contribution -14.78
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -1.04
Structure conservation index 0.72
SVM decision value 0.00
SVM RNA-class probability 0.534470
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2546211 91 - 20766785
AAACUCUAAAACUGUCUACUUACCUCAAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUUGCGCCGACAUACUCCUUGA
............(((((...........))))).((((((.(((.(((...))))))..((((((.((....))))))))....)))))). ( -21.00)
>DroSec_CAF1 24658 91 - 1
AAACUCUAAAAUUGUCUACUUACCUCGAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUUGAGGUGACAUACUCCUUGA
............((((.....((((((((((((........(((((((.........))))))).)))))))))))))))).......... ( -22.60)
>DroSim_CAF1 21232 87 - 1
AAACUCUAAA----UCUACUUACCUCGAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUGUUGGUGACAUACUCCUUGA
.........(----(((.(.......).))))..((((((.(((((((.........))))))).((((........))))...)))))). ( -18.60)
>DroEre_CAF1 21165 90 - 1
AAACUCUGAAAU-UUCCACCUACCUCGAAGAACACAAGGAACCAACUGAGCGAGUGCAAGUUGGCAGUCUUCGCGGUGACAUACUCCUUGA
............-.....................((((((.((((((..((....)).))))))..(((........)))....)))))). ( -19.70)
>DroYak_CAF1 20139 90 - 1
CCAUUCUAAAUG-UUCUACUUACCUCAAAGAAUACAAGGAUCCAACUUAGCGAGUGGAAGUUGGAAGUCUUGGCGCUGACAUACUCCUUGA
..........((-((((...........))))))((((((((((((((.........)))))))).(((........)))....)))))). ( -21.60)
>DroAna_CAF1 20145 81 - 1
-UUCUCU---------GACUCACCUCAAAAAGUAUUAGGAACCAACUAAGAGAGUGAAAGUUGGCGGUUUUCCCGGCAACAUAUUGCUUGU
-......---------...(((((((........((((.......))))))).))))..((((.(((.....))).))))........... ( -17.00)
>consensus
AAACUCUAAAA___UCUACUUACCUCAAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUCGCGGUGACAUACUCCUUGA
..................................((((((.(((((((.........)))))))..(((........)))....)))))). (-14.53 = -14.78 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:38 2006