Locus 4409

Sequence ID 2R_DroMel_CAF1
Location 14,493,775 – 14,493,875
Length 100
Max. P 0.737769
window7047

overview

Window 7

Location 14,493,775 – 14,493,875
Length 100
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 75.42
Mean single sequence MFE -41.91
Consensus MFE -23.07
Energy contribution -24.15
Covariance contribution 1.08
Combinations/Pair 1.19
Mean z-score -1.80
Structure conservation index 0.55
SVM decision value 0.44
SVM RNA-class probability 0.737769
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14493775 100 + 20766785
CGCCAUCGAGCGCAGCAUGUUCGUAGGAGCCUCAAACGCUGAU------CAAGGAGGCGAUUUCAUCCUGCCAUACGGACAAGUUUUCCGCUUUGCCAA------CAC---UAA---C
.((....(((((.(((.((((((((((.(((((..........------....)))))(....)......)).)))))))).)))...))))).))...------...---...---. ( -25.74)
>DroSec_CAF1 125912 106 + 1
CGCCAUCGAGCGCAGCAUGUUCGUCGGAGCCUCAUACGAUGAUCUCGCUCGAGGAGGCGAGUUCGUCCUGCCAAAUGGACAGGUGUUGCGCUUUGGCAA------CGC---UAG---C
.((((..(((((((((((((((....)))).......(((((.((((((......)))))).)))))(((((....)).))))))))))))))))))..------...---...---. ( -46.00)
>DroSim_CAF1 127059 106 + 1
CGCCAUCGAGCGCAGCAUGUUCGUCGGAGCCUCAUACGACGAUCUCGCUCGAGGAGGCGAGUUCGUCCUGCCAAACGGACAGGUGUUGCGCUUUGGCAA------CGC---UAG---C
.((((..(((((((((((((((((..(.((.......(((((.((((((......)))))).)))))..)))..)))))))..))))))))))))))..------...---...---. ( -47.80)
>DroEre_CAF1 131075 115 + 1
GGCCAUCGAGCGCAGUAUGUUCGAAGGAGCCGCCCAAGUUUCCGGCGGUCAAGGUAGCGAUCUCGUCCUGCCAACCGGACGAGUGUUGCGCUUUGCCAAUAGCAACACCAAUAA---C
.(((.(((((((.....))))))).((((.(......).)))))))((.((((((.((((((((((((........))))))).))))))))))))).................---. ( -43.00)
>DroYak_CAF1 129091 118 + 1
GGCCAUCGAGCGCAGCAUGUUCGAAGGAGCCGCUCAAGGGGCCGGCGGUCAAGGAAGCGAUUUAAUCCUGGCAAACGGACGAGUGCUGCGCUUUGCCAAUGGCAACACCAUUAACCAC
(((....((((((((((((((((.....((((((.....)).)))).((((.(((..........)))))))...)))))..))))))))))).)))(((((.....)))))...... ( -47.00)
>consensus
CGCCAUCGAGCGCAGCAUGUUCGUAGGAGCCUCACACGAUGAUCGCGCUCAAGGAGGCGAUUUCGUCCUGCCAAACGGACAAGUGUUGCGCUUUGCCAA______CAC___UAA___C
.......((((((((((((((((((((((((((....................)))))(....).)))).....)))))))..))))))))))......................... (-23.07 = -24.15 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:54 2006