| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,540,884 – 2,540,985 |
| Length | 101 |
| Max. P | 0.760729 |
| Location | 2,540,884 – 2,540,985 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 77.61 |
| Mean single sequence MFE | -21.15 |
| Consensus MFE | -16.35 |
| Energy contribution | -15.77 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2540884 101 - 20766785 UAUAUAAUACUCACAGCGAGGAUAAUAUCCCAAAAGAGGGCAAAGCCCUUCAAAACGUUUGUGGAGCAGGCCAUCUUGCCAAUCCAAUUUUCGGAAACUAU ..........((((((((.((((...)))).....((((((...)))))).....)).)))))).(((((....)))))...(((.......)))...... ( -22.20) >DroSec_CAF1 16346 94 - 1 -------UACUCACCGCGAGGAUAAUAUCCCAAAAGAGGGCAAAGCCCUUCAAAACGUUUGUGGAGCAGGCCAUCUUGCCAAUCCCAAUUUCGGAAACUGA -------......((....))......(((.(((.((((((...))))))........(((.(((...(((......)))..))))))))).)))...... ( -23.30) >DroSim_CAF1 15737 94 - 1 -------UACUCACCGCGAGGAUAAUAUCCCAAAAGAGGGCAAAGCCCUUCAAAACGUUUGUGGAGCAGGCCAUCUUGCCAAUCCCAAUUUCGGAAACUGA -------......((....))......(((.(((.((((((...))))))........(((.(((...(((......)))..))))))))).)))...... ( -23.30) >DroEre_CAF1 16091 89 - 1 -------UACUCACGGCGAGGAUAAUAUCCCAGAAGAGGGCAAACCCCUUCGAAACGUUUGUGGAGCAGGCCAUCUUGCCAAUCCAAUGUAUGGAC----- -------.......(((((((...........((((.(((....))))))).....(((((.....)))))..)))))))..((((.....)))).----- ( -26.10) >DroYak_CAF1 14334 78 - 1 -------UACUUACAGCGAGGAUAAUAUCCCAAAAGAGGGAAAACCCCUUCAAAACGUUUGUGGAGCAGGCCAUCUUGCUAAUCC---------------- -------...((((((((.((((...)))).....(((((......)))))....)).))))))((((((....)))))).....---------------- ( -18.70) >DroAna_CAF1 14977 84 - 1 -------UACUUACAGCAUAGAUGAUGUCCCAGAAGAGGGAGAAUCCUUUUAAUACGUUUGUGGAGCAAGCCAUUUUUUAUAUUCCAAUAU---------- -------..........(((((.((((((((......))))...............(((((.....))))))))).)))))..........---------- ( -13.30) >consensus _______UACUCACAGCGAGGAUAAUAUCCCAAAAGAGGGCAAAGCCCUUCAAAACGUUUGUGGAGCAGGCCAUCUUGCCAAUCCCAAUUUCGGAA_____ ...................((((....(((((((.(((((.....))))).......)))).)))(((((....)))))..))))................ (-16.35 = -15.77 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:37 2006