Locus 4398

Sequence ID 2R_DroMel_CAF1
Location 14,476,072 – 14,476,163
Length 91
Max. P 0.597187
window7032

overview

Window 2

Location 14,476,072 – 14,476,163
Length 91
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 67.12
Mean single sequence MFE -23.10
Consensus MFE -11.50
Energy contribution -13.54
Covariance contribution 2.04
Combinations/Pair 1.24
Mean z-score -1.58
Structure conservation index 0.50
SVM decision value 0.13
SVM RNA-class probability 0.597187
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14476072 91 + 20766785
--------------UUUUUUAUCC----GUAUGCAUGAAUAU--A-AUUUGUAGCCAUAAGGCUGCAUAAGGUUAAGAUGCUUAGUUGCGGGUCGGGAACUAAGAACUGAGA
--------------((((..((((----(((.((((....((--.-...(((((((....)))))))....))....)))).....)))))))..))))............. ( -24.20)
>DroSim_CAF1 109026 95 + 1
--------------UUUAUCAUAUAAAUUUAUUCCUGAAUAU--A-AUUUGUAGCCAUGAGGCUACAGAAGGUUAAAAAGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGA
--------------.............(((((((((((....--.-.(((((((((....)))))))))..........((......))...))))))).))))........ ( -21.70)
>DroEre_CAF1 109687 103 + 1
---UAUUCGUGGGCUAAAUUAUCC----UGAUGUAUGAAUAU--CAUUUUGUGGCCAAGAGGCUACAGAAGGUUAAGAUGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGA
---..((((..(.((((((.(((.----((((((....))))--))((((((((((....))))))))))......))))))))))..))))((((..........)))).. ( -32.10)
>DroYak_CAF1 111055 101 + 1
-----UUCAGGGGCUUUAUUAUCU----UUAUGUAUGAAUAU--UAGUUUGUAGCCAUGAGGCGGCAGAAGGUUAAGAUGUUUAGUGGCGGGUCGGGAACUAAGAACCGAGA
-----....((..(((.....(((----(..(((.(((((((--(..(((((.(((....))).))))).......))))))))...)))....))))...)))..)).... ( -20.60)
>DroAna_CAF1 120413 93 + 1
AAUUGUUU-----CUAAACUAUCU----AUAUUUCUUAAAAUAUUCACUU----CC-AGAAUAUGUAAAAGGUUAAA--GCUAAGGU---AGUUGGAAACCCAGAACCGAGA
....((((-----((((.((((((----............((((((....----..-.))))))......(((....--))).))))---))))))))))............ ( -16.90)
>consensus
_____UU______CUUUAUUAUCU____UUAUGUAUGAAUAU__A_AUUUGUAGCCAUGAGGCUGCAGAAGGUUAAGAUGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGA
...............................................(((((((((....))))))))).((((......(((((((.(......).))))))))))).... (-11.50 = -13.54 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:39 2006