Locus 4394

Sequence ID 2R_DroMel_CAF1
Location 14,455,314 – 14,455,423
Length 109
Max. P 0.538611
window7027

overview

Window 7

Location 14,455,314 – 14,455,423
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.59
Mean single sequence MFE -18.94
Consensus MFE -14.12
Energy contribution -13.98
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -1.24
Structure conservation index 0.75
SVM decision value 0.01
SVM RNA-class probability 0.538611
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14455314 109 + 20766785
AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGCU-------AGGA---GUAAGCCAAGAAG-
...((...((..........(((((((........))))))).........(((((((..(((((.................)))))..)))-------))))---))...))......- ( -21.33)
>DroVir_CAF1 112464 96 + 1
AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGCCGAAGC----------AGGA---GAA-----------
....................(((((((........)))))))((((..(((((.....)))))...)))).......((.(((....))----------))).---...----------- ( -16.30)
>DroGri_CAF1 105814 93 + 1
AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUCAGCGAUUGGCAGCGCAGAUUUACCAUGCUGAA-------------GGA---GAA-----------
...((...............(((((((........)))))))((((..(((((.....)))))...)))).......))........-------------...---...----------- ( -14.40)
>DroWil_CAF1 148442 104 + 1
AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGUAAUAAUUUUAGCGAUUGGCAGCGCCGAUUUACCAUGGGCAAAAAUC-------G--C---AAAAAAUAUA----
....................(((((((........))))))).....(((.((((.((((((......(((.((.....)).)))...))))-------)--)---.)))).))).---- ( -17.00)
>DroYak_CAF1 90080 117 + 1
AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGCUAGGAGCUAGGA---GUAAGCCAAGCAAA
....................(((((((........))))))).........(((((((..(((((.................)))))..)))))))(((.((.---.....)).)))... ( -23.73)
>DroAna_CAF1 98751 109 + 1
AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUCAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGCC-------AACUUCCAACAGCCAAC----
...((((.............(((((((........)))))))((((..(((((.....)))))...))))..........((((.....)))-------)..))))..........---- ( -20.90)
>consensus
AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGC________AGGA___GAAAGCCAA_____
...((...............(((((((........)))))))((((..(((((.....)))))...)))).......))......................................... (-14.12 = -13.98 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:34 2006