| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,426,044 – 14,426,149 |
| Length | 105 |
| Max. P | 0.531093 |
| Location | 14,426,044 – 14,426,149 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 74.50 |
| Mean single sequence MFE | -37.73 |
| Consensus MFE | -18.19 |
| Energy contribution | -19.08 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.48 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14426044 105 - 20766785 UUUGAACAAGGCCAACAAGUAUAUGGUUUCCGACAUGGGCAGUGAACUGCUCUAUUCGGAGAGCACAGUGAUUGGUUUGGUUCAGGAUGCCAC-GACCAC--CUCUGG (((((((.(((((((((....(.((.(((((((...((((((....))))))...))))))).)).).)).))))))).)))))))...(((.-((....--.))))) ( -37.50) >DroPse_CAF1 57049 106 - 1 GAUCAACAAGGCCGACAAGUACUUCGCCAGCGAUCAGGGCAGCGAGCUGCUCUACACGGAGAGCACGCUGAUGUCCCUGAUCAAGGACGCCACCGACGAGGGUCCG-- .........(((.((........)))))...(((((((((((((.(((.((((....))))))).)))))....))))))))..((((.((........)))))).-- ( -42.80) >DroEre_CAF1 59845 105 - 1 UUUAAACAAGGCCAACAAGUAUAUGAUAUCCGACAUGGGCAGUGAACUGCUCUAUUCGGAGAGCACAGUAAUGAGUUUGGUGCAGGAUGCCAC-GACCAG--CUCUGG ...........(((..............(((((...((((((....))))))...)))))((((.((....)).(((((((.......)))).-)))..)--)))))) ( -30.80) >DroYak_CAF1 59690 105 - 1 UUUGACCAAGGCCAGCAAGUAUAUGACAUCCGACAUGGGCAGUGAACUGCUCUAUUCGGAGAGCACGAUAAUGACCUUGGUGCAGGAUGCCAC-GACCAG--CUCUGG (((((((((((.((.....(((.((...(((((...((((((....))))))...)))))...))..))).)).))))))).)))).......-..(((.--...))) ( -34.40) >DroAna_CAF1 67854 105 - 1 CAUCAACAAGGCCAACAAGUUCCUGGCCUCGGACAUGGGCAGUGAGCUGCUUUACUCGGAGAGCACCAUGAUUAGUCUGGUGCAGGACGCCAC-CGUGGC--CCCGGG .........(((((....((((((...(((.((...((((((....))))))...)).))).((((((.((....)))))))))))).))...-..))))--)..... ( -38.10) >DroPer_CAF1 59665 106 - 1 GAUCAACAAGGCCGACAAGUACUUCGCCAGCGAUCAGGGCAGCGAGCUGCUCUACACGGAGAGCACGCUGAUGUCCCUGAUCAAGGACGCCACCGACGAGGGUCCU-- .........(((.((........)))))...(((((((((((((.(((.((((....))))))).)))))....)))))))).(((((.((........)))))))-- ( -42.80) >consensus UAUCAACAAGGCCAACAAGUACAUGGCCUCCGACAUGGGCAGUGAACUGCUCUACUCGGAGAGCACGAUGAUGACCCUGGUGCAGGACGCCAC_GACCAG__CCCUGG .........(((.............((((((((...((((((....))))))...)))))).))...........(((.....)))..)))................. (-18.19 = -19.08 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:23 2006