| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,424,443 – 14,424,551 |
| Length | 108 |
| Max. P | 0.992248 |
| Location | 14,424,443 – 14,424,551 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 74.62 |
| Mean single sequence MFE | -29.67 |
| Consensus MFE | -15.41 |
| Energy contribution | -15.58 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.52 |
| SVM decision value | 2.32 |
| SVM RNA-class probability | 0.992248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14424443 108 + 20766785 CUAUUCCUACCAGGGCGAACUCUAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUU---UCCACCGGGUCUUCCUUUUUCAUCAGCAUCAUGUUAAUGAAGGUGA ......((.((.(((((............)))))....((((.......)))).)).))...---..(((((((....)))..(((((.(((.....))).))))))))). ( -24.00) >DroSec_CAF1 56538 108 + 1 CUAUCCCCACCAGGGCGAACUCUAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUC---UCCACCGGUUCUUCCUUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA .......((((((((.(((((.....((((........))))............((..(...---.)..))))))).))))..(((((((((.....))))))))))))). ( -29.70) >DroSim_CAF1 56382 108 + 1 CUAUCCCCACCAGGGCGAACUCUAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUC---UCCACCGGUUCUUCCUUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA .......((((((((.(((((.....((((........))))............((..(...---.)..))))))).))))..(((((((((.....))))))))))))). ( -29.70) >DroYak_CAF1 58068 108 + 1 CUAACGCUACUAGAGCGUAUUCCACAAGCCGCUCGUAAGGAUACAUAUUAUCCAAACAGUUU---UCCUCCGUCUCUUCAGUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA ....(((((((.(((((..((....))..)))))((..(((((.....)))))..)))))..---..................(((((((((.....))))))))))))). ( -26.10) >DroMoj_CAF1 95535 111 + 1 CUACAAAAACGAGAGCAUAUUCCAAUAUGCGUUCGUUUGGAAACAUGCCCUGGUUGCAGUUCUUAUCCUCCAGCUCAGUGUUCUUCAUCAGCAUCAUGUCGAUGAAGGUGA ......(((((((.((((((....)))))).)))))))(....)..((.(((((((.((........)).)))).))).))((((((((.((.....)).))))))))... ( -31.50) >DroAna_CAF1 66027 111 + 1 CCACACCCACCAGGAUAUACUCCACCAUCCUCUCGCCCACAAACAUGUCGGGCAGGCAAUUGUCGUCCACCGCCUCGACCUGCUUCAUCAGCAUCAUGUUGAUGAAGCGGA ............((((..................(((((((....))).)))).(((....)))))))...........(((((((((((((.....))))))))))))). ( -37.00) >consensus CUAUCCCCACCAGGGCGAACUCCAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUC___UCCACCGGCUCUUCCUUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA ............(((((............)))))...............................................(((((((((((.....)))))))))))... (-15.41 = -15.58 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:22 2006