Locus 4385

Sequence ID 2R_DroMel_CAF1
Location 14,420,097 – 14,420,192
Length 95
Max. P 0.594819
window7013

overview

Window 3

Location 14,420,097 – 14,420,192
Length 95
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 72.67
Mean single sequence MFE -28.08
Consensus MFE -10.47
Energy contribution -10.38
Covariance contribution -0.08
Combinations/Pair 1.20
Mean z-score -1.94
Structure conservation index 0.37
SVM decision value 0.12
SVM RNA-class probability 0.594819
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14420097 95 + 20766785
-AAGCUGACAAAUUUAUUGUCGCCGGUGACAUAAAUAUCGGUAUCAGAGCU--CAGAGCUC--AGACU-UCAGAAUGCUGACCC--ACU-GGCGAUGUGUCG--CG--
-..((.((((........((((((((((..................((((.--....))))--.....-((((....))))..)--)))-)))))).)))))--).-- ( -30.80)
>DroVir_CAF1 71746 89 + 1
-AAGCUGACAAAUUUAUUGUCGCCGACGACAUAAA--UCGGUAUCGGAGCU--GAC---C----------UACAAUUCGCUGCCAGUCU-GGAAAUGUGUCAGAGACA
-...((((((.((((..(((((....)))))....--..((((.((((..(--(..---.----------..)).)))).)))).....-..)))).))))))..... ( -22.70)
>DroSec_CAF1 52179 95 + 1
-AAGCUGACAAAUUUAUUGUCGCCGGUGACAUAAAUAUCGGUAUCAGAGCU--CAGAGCUC--AGACA-UCAGAAUGCUGACCC--ACU-GGCGAUGUGUCG--CG--
-..((.((((........((((((((((..................((((.--....))))--.....-((((....))))..)--)))-)))))).)))))--).-- ( -30.90)
>DroEre_CAF1 53865 96 + 1
-AAGCUGACAAAUUUAUUGUCGCCGGUGAUAUAAAUAUCGGUAUCAGAGCU--CAGAGCUC--AGACU-UCAGAAUUCUGACCC--ACUCGGCGAUGUGUCG--CG--
-..((.((((........((((((((((..................((((.--....))))--.....-((((....))))..)--)).))))))).)))))--).-- ( -30.00)
>DroWil_CAF1 100740 106 + 1
AAAGCUGACAAAUUUAUUGUCGCCGUUGACAUAAAUAUCGGUAACAGUCGUAACCGAGUAGAGAGACAGGCAGAGAAUUGACCCA-ACU-GGAAAUGUGUCAGACAGA
...(((((((.(((((((.((((((((....((....(((((.((....)).))))).))....))).))).)).)))....((.-...-)))))).)))))).)... ( -26.50)
>DroAna_CAF1 61804 85 + 1
-AAGCUGACAAAUUUAUUGUCGCCGGUGACAUAAAUAUCGGUAUCACUGCU--UCUGGC-----------------AGUGGCCC--ACU-GGAAAUGUGUCAGACGAC
-..(((((((.((((((.((((....)))))))))).(((((.(((((((.--....))-----------------)))))...--)))-)).....)))))).)... ( -27.60)
>consensus
_AAGCUGACAAAUUUAUUGUCGCCGGUGACAUAAAUAUCGGUAUCAGAGCU__CAGAGCUC__AGAC__UCAGAAUACUGACCC__ACU_GGAAAUGUGUCA__CG__
.....(((((.(((..(((..(((((((.......)))))))..)))...................................((......)).))).)))))...... (-10.47 = -10.38 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:21 2006