Locus 4383

Sequence ID 2R_DroMel_CAF1
Location 14,414,403 – 14,414,494
Length 91
Max. P 0.530046
window7010

overview

Window 0

Location 14,414,403 – 14,414,494
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 73.62
Mean single sequence MFE -29.40
Consensus MFE -5.79
Energy contribution -6.18
Covariance contribution 0.39
Combinations/Pair 1.17
Mean z-score -2.51
Structure conservation index 0.20
SVM decision value -0.01
SVM RNA-class probability 0.530046
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14414403 91 + 20766785
GCC-----GCCUGGCUUCUUGGCUUCUUGGCUUCUCCUGGGAAUCAGGUUAG----CCUGGCUAGCACGAGAGUAACCAUAUUUCUUUGCUUCUUAAUAA
...-----(((.((((.(((((.((((..(......)..)))))))))..))----)).))).((((.(((((.........)))))))))......... ( -28.00)
>DroSec_CAF1 46563 87 + 1
GCC-----GCCUGGCUUCUU--------GGCUUCUCCUGGGAAUCAGGUUAGCCAGCCUGGCUCGCACGAGAGCAGCCAUAUUUCUUUGCUUCUUAAUAA
(((-----....)))....(--------((((((((.((.((..((((((....))))))..)).)).))))..)))))..................... ( -28.90)
>DroSim_CAF1 49336 83 + 1
GCC-----GCCUGGCUUCAU--------GGCUUCUCCUGGGAAUCAGGUUAG----CCUGGCUCGCAGGAGAGCAGCCAUAUUUCUUUGCUUCUUAAUAA
(((-----....)))...((--------(((((((((((.((..((((....----))))..)).)))))))..)))))).................... ( -35.50)
>DroEre_CAF1 48341 95 + 1
GCCUGGCUGCCUGGCUUCCUGGCUUCUUGGCAUCUCCUGGGAAUCAGGUUAG----CCUGGCUGGC-CGGGCGAAACCAUAUUUCUUCGCUUCUUAAUAA
(((((((((((.((((.(((((.((((..(......)..)))))))))..))----)).))).)))-)))))((((.....))))............... ( -42.40)
>DroYak_CAF1 48166 87 + 1
GGC--------UGGCUUCCUGGCUUCUUGGCUUCUCCUGGGAAUCAGGUUAG----CCCGGCUCGC-CGGGAGAAACCAUAUUUCUUUGCUUCUUAAUAA
(((--------..(....)..)))...(((.(((((((((((..(.((....----)).)..)).)-)))))))).)))..................... ( -29.10)
>DroPer_CAF1 47830 82 + 1
GCAUG-CCGCACAGCCACAG--------CUAUUCUCCUGGGAAUCAGGUUAA----CUUCUCCGCC---GCCGCUACC--GCUCCUCCGCUUCUUAAUAA
((..(-(.((..(((....)--------)).....((((.....))))....----.......)).---)).((....--))......)).......... ( -12.50)
>consensus
GCC_____GCCUGGCUUCAU________GGCUUCUCCUGGGAAUCAGGUUAG____CCUGGCUCGC_CGAGAGCAACCAUAUUUCUUUGCUUCUUAAUAA
............(((................((((....))))(((((........)))))...........................)))......... ( -5.79 =  -6.18 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:18 2006