| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,404,425 – 14,404,537 |
| Length | 112 |
| Max. P | 0.554545 |
| Location | 14,404,425 – 14,404,537 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.51 |
| Mean single sequence MFE | -30.44 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.70 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14404425 112 - 20766785 UUCGCAUGAGGAAUUUCGCCAUAGGAAUGCUUUUUCAAUUGAACUGUCGCACACGUGACAGUAAA-------UGUAA-AAAGUAUUCGGGACCAGCAGGCGAACAUGAAAUUUUCAUCAG ...(.(((((((..((((((....(((((((((((..(((..((((((((....)))))))).))-------)..))-)))))))))(....)....)))))).......)))))))).. ( -34.50) >DroSec_CAF1 36545 112 - 1 UUCGCAUGAGGAAU-UCGCCAUUGGAAUGCUUUUUCAAUUGAAUUGUCGCACACGUGACAGUAAA-------UGGAAAAAAGUAUUCGGGACCAGCAGGCGAACAUGAAAUUUUCAUCAG ....((((.....(-(((((....((((((((((((.(((..((((((((....)))))))).))-------).).)))))))))))(....)....))))))))))............. ( -31.90) >DroEre_CAF1 38299 111 - 1 UUCGCAUGAGGAAU-UCGCCAAAGCAAUGCUUUUUCAAUUGAACUGUCGCACACGUGACAGUAAA-------UGGAA-AAAGUAUUCGGGACCAGCAGGCGAACAUGAAAUUUUCAUCAG ....((((.....(-(((((...(((((((((((((.(((..((((((((....)))))))).))-------).)))-)))))))).(....).)).))))))))))............. ( -34.50) >DroYak_CAF1 37780 111 - 1 UUCGCAUGAGGAAU-UCGCCAUAGCAAUGCUUUUUCAAUUGAACUGUCGCACACGUGACAGUAAA-------UGGAA-AAAGUAUUCGAGAGCAGCAGGCGAACAUGAAAUUUUCAUCAG ....((((.....(-(((((...(((((((((((((.(((..((((((((....)))))))).))-------).)))-))))))))(....)..)).))))))))))............. ( -34.30) >DroAna_CAF1 43959 118 - 1 UUCGCUCGAGGUAU-UCUCCAUAGGAAUGAUUUUUCAAUUGAACUCUCGCACACGUGACAGCCGAGGAAGUACGCAA-AAAAUAUAUAAAAAAUGCGCUGGAACACAAAAUUUUCAUCAG ...(.((.((((((-(.(((...((..(((....)))......((.((((....)))).))))..))))))))(((.-...............))).)).)).)................ ( -16.99) >consensus UUCGCAUGAGGAAU_UCGCCAUAGGAAUGCUUUUUCAAUUGAACUGUCGCACACGUGACAGUAAA_______UGGAA_AAAGUAUUCGGGACCAGCAGGCGAACAUGAAAUUUUCAUCAG (((((.((.((.......))....(((((((((.((....))((((((((....))))))))................)))))))))........)).)))))................. (-18.66 = -19.70 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:16 2006