| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,398,158 – 14,398,259 |
| Length | 101 |
| Max. P | 0.816478 |
| Location | 14,398,158 – 14,398,259 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.61 |
| Mean single sequence MFE | -23.95 |
| Consensus MFE | -16.28 |
| Energy contribution | -16.95 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14398158 101 - 20766785 UGA---ACUGCGCUGAACUUCUUGAAGCGGAAGUUCAAGGCGUUCACUCAAUUGUAUCGUGUAAUGAAAUGUUUUAUAACACCAA--AACAGACACCAAAACACCA (((---((.((..(((((((((......)))))))))..))))))).....((((...((((.(((((....))))).))))...--.)))).............. ( -23.70) >DroPse_CAF1 29485 85 - 1 ----------CGCUGAACUUCUUGAAGCGGAAGUUCAAGGCGUUCACUCAAUUGUAUCGUGUAAUGAAAUGUUUUAUAACACCAGACAACAGAUA----------- ----------...(((((.(((((((.(....)))))))).))))).((..((((...((((.(((((....))))).))))...))))..))..----------- ( -22.70) >DroGri_CAF1 42279 101 - 1 ---UUGUGUGUUUUGAACUUCUUUAAGCGGAAGUUCAAGGCGUUCACUCAAUUGUAUCGUGUAAUGAAAUGUUUUAUAAGUC-AGACAACAGACAACAAGGAAC-A ---......(((((((((((((......)))))))))))))((((.((...((((....(((..(((..(((...)))..))-).)))....))))..))))))-. ( -25.40) >DroEre_CAF1 32070 100 - 1 UGA---ACUGCGCUGAACUUCUUGAAGCGGAAGUUCAAGGCGUUCACUCAAUUGUAUCGUGUAAUGAAAUGUUUUAUAACACCAA--AACAGACACCA-AACACCA (((---((.((..(((((((((......)))))))))..))))))).....((((...((((.(((((....))))).))))...--.))))......-....... ( -23.70) >DroAna_CAF1 37037 96 - 1 UGA---ACUGAGCUGAACUUCUCGAAGCGGAAGUUCAAGGCGUUCACUCAAUUGUAUCGUGUAAUGAAAUGUUUUAUAACACC-------AGAUACCAAAACAGCG ...---..((((.(((((.(((.(((.(....)))).))).)))))))))...(((((((((.(((((....))))).)))).-------.))))).......... ( -24.50) >DroPer_CAF1 30913 96 - 1 ----------CGCUGAACUUCUUGAAGCGGAAGUUCAAGGCGUUCACUCAAUUGUAUCGUGUAAUGAAAUGUUUUAUAACACCAGACAACAGACAACACUGAACUG ----------...(((((.(((((((.(....)))))))).))))).....((((...((((.(((((....))))).))))...))))(((......)))..... ( -23.70) >consensus ______ACUGCGCUGAACUUCUUGAAGCGGAAGUUCAAGGCGUUCACUCAAUUGUAUCGUGUAAUGAAAUGUUUUAUAACACCAG__AACAGACACCAAAACACCA .............(((((.(((((((.(....)))))))).)))))............((((.(((((....))))).))))........................ (-16.28 = -16.95 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:15 2006