Locus 4373

Sequence ID 2R_DroMel_CAF1
Location 14,369,569 – 14,369,660
Length 91
Max. P 0.775266
window6996

overview

Window 6

Location 14,369,569 – 14,369,660
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 76.52
Mean single sequence MFE -34.01
Consensus MFE -20.80
Energy contribution -19.75
Covariance contribution -1.05
Combinations/Pair 1.42
Mean z-score -1.58
Structure conservation index 0.61
SVM decision value 0.54
SVM RNA-class probability 0.775266
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14369569 91 + 20766785
UCCGUACUCAAAAGCCACGCCCUCGAGCGGAGGCGUAAGGCGCAGGGUGCGAUUGAGACGCUCUUUCAAAUCAGCAAUGGUCUGCACAUGG---
.((((........((((((((..(....)..)))))..)))(((((.(((((((((((.....)))).)))).)))....)))))..))))--- ( -29.80)
>DroPse_CAF1 3454 91 + 1
UCCGUACUCAAAGGCCACGCCCUCCAGUGGGGGAGUCAGGCGCAGAGUGCGAUUCAAGCGGGUAAACAAAUCCGUGAUGGUCUACGGAAGG---
(((((((((....(((((.(((((....))))).))..)))...))))))((((...((((((......))))))...))))...)))...--- ( -33.70)
>DroEre_CAF1 3799 91 + 1
UCCGUACUCGAAGGCCACACCCUCGAGCGGAGGCGUAAGGCGCAGGGUGCGAUUCAGGCGGUCUUUCAGAUCAUCAAUGGUCUGUAGAGGA---
..(((((((....(((..((((((.....)))).))..)))...)))))))..........((((((((((((....))))))).))))).--- ( -32.60)
>DroYak_CAF1 3684 91 + 1
UCCGUACUCGAAAGCCACGCCCUCGAGCGGAGGCGUAAGGCGCAGGGUGCGAUUGAGACGCUCUUUCAGAUCAGCAAUGGUCUGUAGAUGG---
..(((((((....((((((((..(....)..)))))..)))...))))))).......((.(((..(((((((....))))))).))))).--- ( -37.10)
>DroAna_CAF1 3906 94 + 1
ACCGUACUCGAAGGCCACUCCCUCCAGUGGAGGGGUAAGCUUCAGGGGGCGGCUCAGAAGACUCUUCAAAUCGUCAAUGGUCUGGGUGCGGAAA
.((((((((...((((((.((((((...))))))))..((((....))))))))....(((((...............)))))))))))))... ( -37.06)
>DroPer_CAF1 3455 91 + 1
UCCGUACUCAAAGGCCACACCCUCCAGUGGGGGAGUGAGGCGCAGAGUGCGAUUCAAGCGAGUAAACAAAUCCGUGAUGGUCUACGGAAGG---
..(((((((....(((.((((((((...))))).))).)))...)))))))((((....)))).......((((((......))))))...--- ( -33.80)
>consensus
UCCGUACUCAAAGGCCACGCCCUCCAGCGGAGGCGUAAGGCGCAGGGUGCGAUUCAGACGAUCUUUCAAAUCAGCAAUGGUCUGCAGAAGG___
..(((((((....(((..((((((.....)))).))..)))...)))))))......................(((......)))......... (-20.80 = -19.75 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:04 2006