| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,367,904 – 14,368,011 |
| Length | 107 |
| Max. P | 0.564522 |
| Location | 14,367,904 – 14,368,011 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 85.29 |
| Mean single sequence MFE | -22.21 |
| Consensus MFE | -13.79 |
| Energy contribution | -16.47 |
| Covariance contribution | 2.69 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14367904 107 + 20766785 AACUUCACGCGUGUACCUGGCCCUAAAACAAGGUACCCUUUUCAGUAUUUUGUGUUUGCUGAGGUACAACAUUUAAAAAAUACCGAUAAUGAUAAAAAUUAAACUAU ...........((((((((((......(((((((((........)))))))))....))).)))))))....................................... ( -19.90) >DroSec_CAF1 2113 104 + 1 AACUUCGCACGUGUACCUGGCCCUAAAUCCAGGUACCCUUUCUAGUAUUUUGUGUUUGCUGAGGUAC---AUUUUAAAAAUACCGUUUAAGCUAAGAAAUAAACUAU ..(((.((..(.((((((((........)))))))).)......(((((((..((.(((....))).---))....))))))).......)).)))........... ( -21.70) >DroSim_CAF1 2115 104 + 1 AACUUCGCGCGUGUACCUGGCCCUAAAACCAGGUACCCUUUUUAGUAUUUUGUGUUUGCUCAGGUAC---ACUUUAAAAAUACCGUUUAAGCUAAGAAAUAAACCAU ..(((.((..(((((((((((......((.((((((........)))))).))....)).)))))))---)).(((((.......))))))).)))........... ( -24.40) >DroEre_CAF1 2076 106 + 1 AACUGAAUGCGUGUACCUGGCCCUAAAACACGGUACCCUAUUUAGUAUUUUGUGGUUUCUAAGGUACACCAUUUAAAAAAUACCGAUAAUGCUAAAAAAUA-ACUAU ...((((((.((((((((.........(((..((((........))))..)))........))))))))))))))..........................-..... ( -22.83) >consensus AACUUCACGCGUGUACCUGGCCCUAAAACAAGGUACCCUUUUUAGUAUUUUGUGUUUGCUGAGGUAC___AUUUAAAAAAUACCGAUAAAGCUAAAAAAUAAACUAU ..........(.((((((((........)))))))).)(((((((((((..((((((...(((........)))...))))))....)))))))))))......... (-13.79 = -16.47 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:03 2006