Locus 437

Sequence ID 2R_DroMel_CAF1
Location 2,517,756 – 2,517,856
Length 100
Max. P 0.999292
window842

overview

Window 2

Location 2,517,756 – 2,517,856
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 71.38
Mean single sequence MFE -31.43
Consensus MFE -21.30
Energy contribution -22.09
Covariance contribution 0.79
Combinations/Pair 1.27
Mean z-score -2.08
Structure conservation index 0.68
SVM decision value 3.49
SVM RNA-class probability 0.999292
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2517756 100 + 20766785
CAGUCUGAUCAUCGCCCUCUUCGAGCUGGGCAUCUUCAUCAUGUCGUGCUGCCUGGCCAGCGCGAUGAGGAAGCGCUAGAGCCGAAGUCAGAUACAAUCC
..((((((..........(((((.(((.(((..((((.(((..((((((((......))))))))))).)))).)))..))))))))))))))....... ( -35.90)
>DroVir_CAF1 27080 85 + 1
CAGCUUGAUUGUGGCGCUCUUCGAGCUGGGCAUCUUUGUGAUAGCCUGCUGCUUGGCCAACGCCAUGAGGAAGCGUUA------------AA-UUAAC--
..((((..(..(((((....((((((.(((((((.....))).))))...))))))....)))))..)..))))....------------..-.....-- ( -32.10)
>DroGri_CAF1 26824 90 + 1
UAGUUUGAUAAUUGCGCUCUUCGAGCUGACCAUCUUUGUGAUUUCUUGCUGCUUGGCCAGCGCUAUGAGGAAGCGCUA-AGCUA------AA-UUAAU--
(((((((......((((((((((.((((.(((.....(..(....)..)....))).))))....))))).)))))))-)))))------..-.....-- ( -26.30)
>consensus
CAGUUUGAUAAUCGCGCUCUUCGAGCUGGGCAUCUUUGUGAUAUCCUGCUGCUUGGCCAGCGCCAUGAGGAAGCGCUA_AGC________AA_UUAAU__
..((((..((((((((((....(.((..((((.(.............).))))..)))))))))))))..)))).......................... (-21.30 = -22.09 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:33 2006