Locus 4367

Sequence ID 2R_DroMel_CAF1
Location 14,347,891 – 14,348,006
Length 115
Max. P 0.826356
window6989

overview

Window 9

Location 14,347,891 – 14,348,006
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.23
Mean single sequence MFE -40.20
Consensus MFE -31.22
Energy contribution -31.50
Covariance contribution 0.28
Combinations/Pair 1.16
Mean z-score -1.31
Structure conservation index 0.78
SVM decision value 0.70
SVM RNA-class probability 0.826356
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14347891 115 + 20766785
CGAUCGCUGGUGUCGCGCAAUCCGCAGGGAUACCGCGGCUCCCAGUUCAUUGAUCCCAGCUACAUGUGGCUGGGUCUGGGCAAAUGACAGUGAGACCGC---CGGAGCAGCAGAAUG--G
....(((.((((((.(((.....)).).)))))))))(((((..(((((..((.((((((((....)))))))))))))))........(((....)))---.))))).........--. ( -45.10)
>DroVir_CAF1 242 108 + 1
CGCUCGCUGGUAUCACGCAAUCCGAACGGAUAUCGUGGCUCCCAGUUCAUUGAUCCCAGCUACAUGUGGCUGGGCCUGGGCAAAUGACCAUAAGCUG-C---CGCAUCCACA--------
.(((((((((..(((((..((((....))))..)))))...)))))........((((((((....))))))))...))))............((..-.---.)).......-------- ( -36.70)
>DroPse_CAF1 828 104 + 1
CGCUCGCUGGUGUCGCGCAAUCCGCAGGGCUAUCGCGGCUCGCAGCUCAUCGAUCCCAGCUACAUGUGGCUGGGACUGGGCAAAUAACAGUAAGCCCGU---CGAUG-------------
.....(((((.((((((....((....))....)))))).).)))).(((((((((((((((....)))))))))..((((............)))).)---)))))------------- ( -46.70)
>DroGri_CAF1 242 107 + 1
CGCUCGCUGGUGUCACGCAAUCCCAACGGAUAUCGCGGCUCUCAGUUCAUAGAUCCCAGCUACAUGUGGCUCGGUCUGGGCAAAUGACCAUAAGCCU-----UCCAUUCACA--------
.(((((((((.(((.((..((((....))))..)).))).).))))....(((.((.(((((....))))).)))))))))................-----..........-------- ( -28.90)
>DroAna_CAF1 946 119 + 1
CGCUCCCUGGUGUCGCGCAACCCGCAGGGCUAUCGUGGCUCCCAGUUCAUCGAUCCUAGCUACAUGUGGCUGGGUCUGGGCAAAUGACAGUAAUCCCACGCACCGAACACUC-AAGGCCC
.....((((((((.(((.....))).(((((.((((....(((((.........((((((((....)))))))).)))))...)))).))....)))..)))))((....))-.)))... ( -37.10)
>DroPer_CAF1 828 104 + 1
CGCUCGCUGGUGUCGCGCAAUCCGCAGGGCUAUCGCGGCUCGCAGCUCAUCGAUCCCAGCUACAUGUGGCUGGGACUGGGCAAAUAACAGUAAGCCCGU---CGAUG-------------
.....(((((.((((((....((....))....)))))).).)))).(((((((((((((((....)))))))))..((((............)))).)---)))))------------- ( -46.70)
>consensus
CGCUCGCUGGUGUCGCGCAAUCCGCAGGGAUAUCGCGGCUCCCAGUUCAUCGAUCCCAGCUACAUGUGGCUGGGUCUGGGCAAAUGACAGUAAGCCCGC___CGAAGC__CA________
.(((((((((.((((((....((....))....)))))).).))))........((((((((....))))))))...))))....................................... (-31.22 = -31.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:57 2006