Locus 4366

Sequence ID 2R_DroMel_CAF1
Location 14,341,830 – 14,341,922
Length 92
Max. P 0.885577
window6988

overview

Window 8

Location 14,341,830 – 14,341,922
Length 92
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.24
Mean single sequence MFE -12.47
Consensus MFE -8.43
Energy contribution -8.38
Covariance contribution -0.05
Combinations/Pair 1.33
Mean z-score -1.62
Structure conservation index 0.68
SVM decision value 0.94
SVM RNA-class probability 0.885577
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14341830 92 + 20766785
UUAUCGCUGCAUUAACAA-----AACAAGGCAGUGAAAU-----GGCAGUAGCAGUAGCAUUAACA-------UCAAC--CAUCAACCGCUUAAAACAUACAAAAUUUCAC
...(((((((........-----......))))))).((-----(.....(((.((..........-------.....--.....)).))).....)))............ ( -11.89)
>DroSec_CAF1 7312 89 + 1
UUAUCGCUGCAUUAACAA-----AACAAGGCAGCGAAAU-----GGCAGUAGCA---GCAUUAACA-------UCAAC--CAGCAACCGCUUAAAACAUACAAAAUUUCAC
...(((((((........-----......)))))))...-----(((.((.((.---.........-------.....--..)).)).))).................... ( -14.77)
>DroSim_CAF1 6174 89 + 1
UUAUCGCUGCAUUAACAA-----AACAAGGCAGCGAAAU-----GGCAGUAGCA---GCAUUAACA-------UCAAC--CAGCAACCGCUUAAAACAUACAAAAUUUCAC
...(((((((........-----......)))))))...-----(((.((.((.---.........-------.....--..)).)).))).................... ( -14.77)
>DroEre_CAF1 7361 96 + 1
UUAUCGCUGCAUUUACAA-----AACAAGGCAACGAAAA-----AGCAGCAGCA---GCAUUAACAACCAUCAACAAC--CAGCAACCGCUUAAAACAUACAAAAUUUCAC
.....(((((........-----.....(....).....-----.......)))---))...................--.(((....))).................... ( -10.71)
>DroYak_CAF1 7480 91 + 1
UUAUCGCUGCAUUAACAAAACAAAACAAGGCAGCGAAAA-----AGCAGUAGCA---GCAUUAACAACCAUCA------------ACCGCUUAAAACAUACAAAAUUUCAC
...(((((((...................)))))))..(-----(((.((....---................------------)).))))................... ( -12.56)
>DroAna_CAF1 8293 103 + 1
UUAUCGCUGCAUUAACAA-----UACGAGGCGGCAAAAAUAAAAAUUCGAAACA---AAAUACAAAAAUAAAAACAGUUACAGCUUAAGCUUAAAACAUACAAAAUUUCAC
.....(((((.((.....-----...)).)))))....................---...................(((..(((....)))...))).............. ( -10.10)
>consensus
UUAUCGCUGCAUUAACAA_____AACAAGGCAGCGAAAA_____AGCAGUAGCA___GCAUUAACA_______UCAAC__CAGCAACCGCUUAAAACAUACAAAAUUUCAC
...(((((((...................))))))).........((....)).......................................................... ( -8.43 =  -8.38 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:56 2006