| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,340,466 – 14,340,581 |
| Length | 115 |
| Max. P | 0.757483 |
| Location | 14,340,466 – 14,340,581 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -36.28 |
| Consensus MFE | -26.24 |
| Energy contribution | -26.22 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14340466 115 + 20766785 UCAGAUCGCUGGGCGUCUGUGUGGAAUUGUUGCUGGUGGUGGUGACAUCUUCGUUGUUGCCACUCGCCUCGCCGGAACUGCAAC-GAGAAUUUGAUGAGUUCGUA----AAUUGAGUUCG .((((.(((...))))))).......(((((((.((((((((..(((.......)))..)))).))))((....))...)))))-))(((((..((.........----.))..))))). ( -38.10) >DroVir_CAF1 7552 100 + 1 UCAGAUCGCUGGGCGUCUGUGUUGAAUUGUUGCUGGUCGUGGUGACAUCCUCAUUGUUGCCACUCGCCUCGGCGGAGCUGCACACGGG-AA----------GAUA----ACAAGA----- .((((.(((...)))))))((((...(((((((.(.((((((..(((.......)))..)))).(((....))))).).))).)))).-..----------))))----......----- ( -32.60) >DroGri_CAF1 6838 104 + 1 UCAGAUCGCUGGGUGUUUGUGUUGAAUUGUUGCUGGUGGUGGUAACAUCCUCAUUGUUGCCACUCGCCUCGGCGGUGCUGCAGCAGAA-GA----------GAUAAACAACAAAA----- ((((....)))).(((((((.((...(((((((.(((((((((((((.......))))))))).))))..(((...))))))))))..-))----------.)))))))......----- ( -37.40) >DroYak_CAF1 5947 113 + 1 UCAGAUCGCUGGGCGUCUGUGUGGAAUUGUUGCUGGUGGUGGUGACAUCCUCGUUGUUGCCACUCGCCUCGCCAGAGCUGCAAC-GAGAUUGUGAUGAGUUCGAA----AAAUC--AUCG .((((.(((...))))))).(..(..(((((((.((((((((..(((.......)))..)))).))))..((....)).)))))-))..)..)(((((.......----...))--))). ( -38.60) >DroMoj_CAF1 8768 101 + 1 UCAGAUCGCUGGGCGUCUGUGUGGAAUUGUUGCUGGUGGUGGUGACAUCCUCAUUGUUGCCACUCGAGUCGGCGGUGCUGCAAGCGAGCGA----------GAUA----ACAAAU----- .....(((((...(((...((..(.(((((((((.(.(((((..(((.......)))..)))))).)).))))))).)..)).))))))))----------....----......----- ( -35.70) >DroAna_CAF1 6843 105 + 1 UUAGAUCGCUGGGCGUUUGUGUGGAAUUGUUGCUGGUGGUGGUGACAUCCUCAUUGUUGCCACUCGCCUCGCCAGAACUGCAAC-GGUAGA----------CAUA----AAAUGUGAAUG .....((((......(((((((...((((((((.((((((((..(((.......)))..)))).))))((....))...)))))-)))..)----------))))----))..))))... ( -35.30) >consensus UCAGAUCGCUGGGCGUCUGUGUGGAAUUGUUGCUGGUGGUGGUGACAUCCUCAUUGUUGCCACUCGCCUCGCCGGAGCUGCAAC_GAGAGA__________CAUA____AAAAGA_____ .((((.(((...)))))))(((((..(((..(..(((((((((((((.......))))))))).)))).)..)))..)))))...................................... (-26.24 = -26.22 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:55 2006