Locus 4364

Sequence ID 2R_DroMel_CAF1
Location 14,335,731 – 14,335,849
Length 118
Max. P 0.999687
window6985 window6986

overview

Window 5

Location 14,335,731 – 14,335,849
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 84.87
Mean single sequence MFE -37.26
Consensus MFE -33.14
Energy contribution -34.02
Covariance contribution 0.88
Combinations/Pair 1.24
Mean z-score -4.77
Structure conservation index 0.89
SVM decision value 3.89
SVM RNA-class probability 0.999687
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14335731 118 + 20766785
UUUU-UUCCCUUUUACAUCUGACUAAAAGGCUGUUAGUAUGUUGUGAGCUGGAAAAACUGUAUUGUUUUUCUGUGUUCAUCGUUUAUUUUUGGCCUUCUUGAAAUAUGUAAAUAGGGAU
....-.((((((((((((........(((((((..((((.(..(((((((((((((((......))))))))).))))))..).))))..)))))))........))))))).))))). ( -37.79)
>DroSec_CAF1 1237 119 + 1
UUUUGUACCCUUUUACAUCUGACUAAAAGGCUGUUAGUACGUUGUAAGCUGGAAAAACUGCAUUGUUUUUCUGUGUCUAUCAUUUACUUUUGGCCUUCUGGAAACAUGUAAAUAGGGAU
.......(((((((((((.(..(((.(((((((..((((.((.(((..((((((((((......))))))))).)..))).)).))))..))))))).)))..).))))))).)))).. ( -37.60)
>DroSim_CAF1 1241 119 + 1
GUUUGUACCCUUUUACAUCUGACUAAAAGGCUUUUAGUAUGUUGUGAGCUGGAAAAACUGCAUUGUUUUUCCAUGUUCAUUAUUUACUUUUGGCCUUCUGGAAACAUGUAAAUAGGGAU
.......(((((((((((.(..(((.((((((...((((.((.(((((((((((((((......))))))))).)))))).)).))))...)))))).)))..).))))))).)))).. ( -45.40)
>DroEre_CAF1 1212 118 + 1
UCCGUUACGCUUUUACAUCUGACUAAUAAGCUGUUAGUAUUUUGUGAGCUAGAA-AACUUCCCUGCUUUUCUUUGUUCACCGUGUACUUUUGGCCUUCUAGAAACAUGUAAAUUGGGAU
.......(.(.(((((((.(..(((..(.((((..(((((...((((((.((((-(((......).))))))..))))))...)))))..)))).)..)))..).)))))))..).).. ( -26.90)
>DroYak_CAF1 1202 119 + 1
UCCGUUACCCUUUUACAUCUGUCUAAUAAGCUGUCAGUAUUCUGUGAGCUAGAAAAACUGCACUGUUUUUCUUUGUUCGCCGUGUACUUUUGGCCUUCUAGAAACAUGUAAAUUGGGAU
.......(((.(((((((...((((..(.((((..(((((.(.((((((.((((((((......))))))))..)))))).).)))))..)))).)..))))...)))))))..))).. ( -38.60)
>consensus
UUUUGUACCCUUUUACAUCUGACUAAAAGGCUGUUAGUAUGUUGUGAGCUGGAAAAACUGCAUUGUUUUUCUGUGUUCAUCGUUUACUUUUGGCCUUCUAGAAACAUGUAAAUAGGGAU
.......(((((((((((.(..(((.(((((((..((((..(.(((((((((((((((......))))))))).)))))).)..))))..))))))).)))..).))))))).)))).. (-33.14 = -34.02 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 14,335,731 – 14,335,849
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 84.87
Mean single sequence MFE -28.49
Consensus MFE -22.06
Energy contribution -23.02
Covariance contribution 0.96
Combinations/Pair 1.14
Mean z-score -3.66
Structure conservation index 0.77
SVM decision value 3.13
SVM RNA-class probability 0.998534
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14335731 118 - 20766785
AUCCCUAUUUACAUAUUUCAAGAAGGCCAAAAAUAAACGAUGAACACAGAAAAACAAUACAGUUUUUCCAGCUCACAACAUACUAACAGCCUUUUAGUCAGAUGUAAAAGGGAA-AAAA
.(((((.(((((((....(.(((((((.............(((.(...(((((((......)))))))..).))).............))))))).)....)))))))))))).-.... ( -27.77)
>DroSec_CAF1 1237 119 - 1
AUCCCUAUUUACAUGUUUCCAGAAGGCCAAAAGUAAAUGAUAGACACAGAAAAACAAUGCAGUUUUUCCAGCUUACAACGUACUAACAGCCUUUUAGUCAGAUGUAAAAGGGUACAAAA
..((((.(((((((.(..(.(((((((....((((..((..((.....(((((((......)))))))...))..))...))))....))))))).)..).)))))))))))....... ( -28.80)
>DroSim_CAF1 1241 119 - 1
AUCCCUAUUUACAUGUUUCCAGAAGGCCAAAAGUAAAUAAUGAACAUGGAAAAACAAUGCAGUUUUUCCAGCUCACAACAUACUAAAAGCCUUUUAGUCAGAUGUAAAAGGGUACAAAC
..((((.(((((((.(..(.(((((((....((((.....(((...(((((((((......)))))))))..))).....))))....))))))).)..).)))))))))))....... ( -35.10)
>DroEre_CAF1 1212 118 - 1
AUCCCAAUUUACAUGUUUCUAGAAGGCCAAAAGUACACGGUGAACAAAGAAAAGCAGGGAAGUU-UUCUAGCUCACAAAAUACUAACAGCUUAUUAGUCAGAUGUAAAAGCGUAACGGA
.......(((((((.(..((((.((((....((((....((((....((((((.(......)))-))))...))))....))))....)))).))))..).)))))))........... ( -21.80)
>DroYak_CAF1 1202 119 - 1
AUCCCAAUUUACAUGUUUCUAGAAGGCCAAAAGUACACGGCGAACAAAGAAAAACAGUGCAGUUUUUCUAGCUCACAGAAUACUGACAGCUUAUUAGACAGAUGUAAAAGGGUAACGGA
..(((..(((((((.(.(((((.((((....((((....(.((....((((((((......))))))))...)).)....))))....)))).))))).).))))))).)))....... ( -29.00)
>consensus
AUCCCUAUUUACAUGUUUCCAGAAGGCCAAAAGUAAACGAUGAACAAAGAAAAACAAUGCAGUUUUUCCAGCUCACAACAUACUAACAGCCUUUUAGUCAGAUGUAAAAGGGUAAAAAA
..((((.(((((((.(..(.(((((((....((((.....(((....((((((((......))))))))...))).....))))....))))))).)..).)))))))))))....... (-22.06 = -23.02 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:54 2006