Locus 4362

Sequence ID 2R_DroMel_CAF1
Location 14,334,548 – 14,334,647
Length 99
Max. P 0.745576
window6983

overview

Window 3

Location 14,334,548 – 14,334,647
Length 99
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 78.24
Mean single sequence MFE -36.72
Consensus MFE -28.69
Energy contribution -27.58
Covariance contribution -1.11
Combinations/Pair 1.46
Mean z-score -1.14
Structure conservation index 0.78
SVM decision value 0.46
SVM RNA-class probability 0.745576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14334548 99 + 20766785
GCCGGGAUUGGGAAUCGGACUGAAGGUCCUGGCCGCCGUGGGAGCAGCCGCCUAUGGAGUCAGUCAGUCCCUGUACACCGGUAAGGA-U--------AAAGCCGAUAG
(((((.((.((((....((((((.(((....))).(((((((........)))))))..))))))..)))).))...)))))..((.-.--------....))..... ( -39.80)
>DroVir_CAF1 432 107 + 1
ACCUGGCCUGGGAAUUGGACUGAAGCUCUUGGCUGCCGUGGGUGCAGCAGCCUAUGGUGUCAGUCAAUCCUUGUAUACCGGUAAGUU-CUUAGAUAUACUACAAAUAG
..((((...((((....((((((.(((...((((((.((....)).))))))...))).))))))..))))......))))......-.................... ( -32.60)
>DroEre_CAF1 58 99 + 1
GCCUGGACUGGGAAUCGGACUGAAGGUCCUGGCUGCCGUGGGAGCCGCCGCUUAUGGUGUCAGCCAGUCCCUGUACACCGGUAAGCA-U--------AUAGCCGAUCG
.(((.....))).(((((.(((..(((...((((.(....).)))))))((((((((((((((.......))).))))).)))))).-.--------.)))))))).. ( -36.80)
>DroYak_CAF1 58 99 + 1
GCCGGGACUGGGAAUCGGACUGAAGGUCCUGGCUGCCGUGGGAGCUGCCGCCUAUGGUGUCAGCCAGUCCCUGUACACCGGUAAGCA-U--------AUAGCCGAUCG
((.((((((((.....((((.....))))((((.((((((((........)))))))))))).)))))))).))....((((..((.-.--------...))..)))) ( -42.30)
>DroAna_CAF1 58 99 + 1
ACCGGGAUUGGGAAUUGGAUUGAAGCUCCUGGCCGCAGUUGGAGCCGCCGCCUAUGGUGUCAGCCAGUCCUUGUAUACUGGUAAGUA-C--------AAAACUAAUUU
(((((.((.((((.((((.((((.(((((.(((....))))))))(((((....))))))))))))))))).))...))))).....-.--------........... ( -31.00)
>DroPer_CAF1 5417 100 + 1
ACCUGGACUGGGUAUUGGACUGAAGCUCCUGGCGGCCGCAGGAGCUGUAGCCUAUGGUGUUAGCCAGUCCUUUUACACAGGUAACUGGG--------AAAUGGGAUUG
.((((((((((.((..((.(((.((((((((.(....))))))))).)))))........)).)))))))((((...(((....))).)--------))).))).... ( -37.80)
>consensus
ACCGGGACUGGGAAUCGGACUGAAGCUCCUGGCUGCCGUGGGAGCAGCCGCCUAUGGUGUCAGCCAGUCCCUGUACACCGGUAAGUA_U________AAAGCCGAUAG
(((((.((.((((...((.((((....((.(((.((.((....)).)).)))...))..))))))..)))).))...))))).......................... (-28.69 = -27.58 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:51 2006