Locus 436

Sequence ID 2R_DroMel_CAF1
Location 2,517,547 – 2,517,647
Length 100
Max. P 0.623697
window841

overview

Window 1

Location 2,517,547 – 2,517,647
Length 100
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 51.95
Mean single sequence MFE -25.71
Consensus MFE -10.68
Energy contribution -9.80
Covariance contribution -0.88
Combinations/Pair 1.44
Mean z-score -1.41
Structure conservation index 0.42
SVM decision value 0.18
SVM RNA-class probability 0.623697
Prediction RNA
WARNING Mean pairwise identity too low.

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2517547 100 + 20766785
UUUUUUCCG--------GAUAUUUACGUAUCUAUUCCAUUGCAGUUCUCUUGCUGUGGCAACACGGGAUACCAACAGUAUGAAACCG-----UGCCCAGCUCCUGCUGCGGCU
.......((--------(.....(((((...((((((...((((.....)))).(((....)))))))))...)).))).....)))-----.(((((((....)))).))). ( -29.60)
>DroVir_CAF1 26869 102 + 1
UGAGAUCUAACUUUUCAUUUGAUUUUC------CUGCAAUUUAGUUCAAAUGUUGCGGCGUAAACAGCUUUACGGAUUAUACAGU-----UGUGCCCUCUUCCUGCUGUGGCU
.((((.......))))((((((.....------............))))))((..(((((((((....)))))(((...(((...-----.)))......))).))))..)). ( -18.63)
>DroGri_CAF1 26605 110 + 1
UUAUUUCAAAUUCAUAAAAUAAUCAUCAAUAU-UUUCAAUGCAGUUGGAAUGCUGCGGCGUAAAGGACUUUACCGAUUAUGGAGA--CAAAGUUCCGCUUUCGUGCUGCGGCU
..(((((((...(((((((((........)))-)))..)))...)))))))(((((((((((((....)))))(((...(((((.--.....)))))...))).)))))))). ( -28.90)
>consensus
UUAUUUCAAA_U__U_AAAUAAUUAUC_AU_U_UUCCAAUGCAGUUCAAAUGCUGCGGCGUAAAGGGCUUUACAGAUUAUGAAGA______GUGCCCACUUCCUGCUGCGGCU
...................................................(((((((((...........................................))))))))). (-10.68 =  -9.80 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:32 2006