| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,320,508 – 14,320,605 |
| Length | 97 |
| Max. P | 0.551751 |
| Location | 14,320,508 – 14,320,605 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -29.65 |
| Consensus MFE | -16.10 |
| Energy contribution | -16.48 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14320508 97 - 20766785 ---ACCUUUCUUUAUGGCUCCUCCAAAUCUUCCGUGCGAUAAGAUUCUA--------------GAAAAGAGAUUCUGCAGUCGCACUGCGGCC-----ACGCGAGAUUUGUCGAGUGAC ---...........(.((((...((((((((..(((((((.(((.(((.--------------......))).)))...))))))).(((...-----.)))))))))))..)))).). ( -30.70) >DroPse_CAF1 53356 89 - 1 UAUACCUUUUUUUAUGA-UAUACCAAAUCUUUCACUAGAUAAGA----------------------------UUCUGCAGUCGCAGUGCGACCCGCGCACG-CAGAUUUGUCGAGUGAC .................-.............(((((.((((((.----------------------------.(((((.(...).(((((.....))))))-)))))))))).))))). ( -21.70) >DroSec_CAF1 49619 97 - 1 ---GCCUUUCUUUAUGACUCCUCGAAAUCUUCCGUGCGAUAAGAUUCUA--------------GAAAAGAGAUUCUGCAGUCGCACUGCGGCC-----ACGCGAGAUUUGUCGAGUGAC ---...............(((((((((((((..(((((((.(((.(((.--------------......))).)))...))))))).(((...-----.)))))))))..))))).)). ( -29.80) >DroSim_CAF1 51542 97 - 1 ---GCCUUUCUUUAUGACUCCUCGAAAUCUUCCGUGCGAUAAGAUUCUA--------------GAAAAGAGAUUCUGCAGUCGCACUGCGGCC-----ACGCGAGAUUUGUCGAGUGAC ---...............(((((((((((((..(((((((.(((.(((.--------------......))).)))...))))))).(((...-----.)))))))))..))))).)). ( -29.80) >DroEre_CAF1 50178 97 - 1 ---GCCUUUCUUUAUGGCUCCUCGAAAUCUUCCGUGCGAUAAGAUUCUA--------------GCAACAAGGUUCUGCAGUCGCACUGCGGCC-----ACGAAAGAUUUGUCGAGUGAC ---(((.........)))(((((((((((((.(((((............--------------)).....((..((((((.....))))))))-----))).))))))..))))).)). ( -28.20) >DroYak_CAF1 51033 111 - 1 ---GCCUUUCUUUAUGACUCCACGAAAUCUUCCGUGCGAUAAGAUUCUGGAAUCUAGAAUCUGGAAACCAGAUUCUGCAGUCGCACUGCGGCC-----ACGAGAGAUUUGUCGAGUGAC ---...........(.((((.((.((((((..(((((....(((.(((((..(((((...)))))..))))).)))((((.....)))).).)-----)))..)))))))).)))).). ( -37.70) >consensus ___GCCUUUCUUUAUGACUCCUCGAAAUCUUCCGUGCGAUAAGAUUCUA______________GAAAAGAGAUUCUGCAGUCGCACUGCGGCC_____ACGCGAGAUUUGUCGAGUGAC ..............(.((((..(.(((((((.(((..(...(((.(((.....................))).))).).(((((...)))))......))).))))))))..)))).). (-16.10 = -16.48 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:36 2006