Locus 4351

Sequence ID 2R_DroMel_CAF1
Location 14,315,699 – 14,315,803
Length 104
Max. P 0.805694
window6966

overview

Window 6

Location 14,315,699 – 14,315,803
Length 104
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.66
Mean single sequence MFE -26.23
Consensus MFE -18.30
Energy contribution -18.47
Covariance contribution 0.17
Combinations/Pair 1.15
Mean z-score -1.80
Structure conservation index 0.70
SVM decision value 0.63
SVM RNA-class probability 0.805694
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14315699 104 + 20766785
AAUCAAUCAGCAUUUAUGAGCCGCCAUAAAG-GCA-GAGCACCAGC--UUGCUUGGAGUGUUUAUUGGUGGCCAUU-------UAUAGUAUAUUCGCGUAUAUUUUGAUUGAUUG
((((((((((.((..(((.(((((((((((.-((.-(((((.....--.)))))...)).)))).)))))))))).-------.))(((((((....))))))))))))))))). ( -34.70)
>DroPse_CAF1 48700 108 + 1
UAUCAAUCAACAUUUAUGAGCUUCUAUAAAAAAAA-GAGUUU------CUGCUUUGAGUGUUUAUUGGAUGCCAUUAGGGGUAUAUAGUAUAGUCUGGUAUAUUUUGAUUGAUUG
.(((((((((.((.(((.((((.(((((......(-((((..------..)))))..............((((......)))))))))...)).)).))).)).))))))))).. ( -22.80)
>DroEre_CAF1 45536 106 + 1
AAUCAAUCAGCAUUUAUGAGCCGCCAUAAAG-GCA-GUGCGCUAGCACCAGCUUGGAGUGUUUAUUGGCUGCCAUU-------UAUAGUAUAUUCGCGUAUAUUUUGAUUGAUUG
((((((((((.((..(((.((.((((((((.-((.-.(((....)))((.....)).)).)))).)))).))))).-------.))(((((((....))))))))))))))))). ( -29.80)
>DroYak_CAF1 45926 107 + 1
AAUCAAUCAGCAUUUAUGAGCCGCCAUAAAG-GCAAGAGCACCAGCACCAGCUUGGAGUGUUUAUUGGCUGCCAUU-------UAUAGUAUAUUCGCGUAUAUUUUGAUUGAUUG
((((((((((.((..(((.((.((((((((.-((..((((..........))))...)).)))).)))).))))).-------.))(((((((....))))))))))))))))). ( -29.00)
>DroAna_CAF1 53478 94 + 1
AAUCAAUCAGCAAUUAUGAGCCGCCAUAAAA-CCA-GA------------GCUUGGAGUGUUUAUUGGAUGCCAUU-------UAUAGUAUAUUUUCGUAGAUUUUGAUUGAUUG
((((((((((.(.(((((((...(((((((.-(((-(.------------..))))....)))).)))((((....-------....))))...))))))).).)))))))))). ( -18.30)
>DroPer_CAF1 48729 107 + 1
UAUCAAUCAACAUUUAUGAGCUUCUAUAAAA-AAA-GAGUUU------CUGCUUUGAGUGUUUAUUGGAUGCCAUUAGGGGUAUAUAGUAUAGUCUGGUAUAUUUUGAUUGAUUG
.(((((((((.((.(((.((((.(((((...-..(-((((..------..)))))..............((((......)))))))))...)).)).))).)).))))))))).. ( -22.80)
>consensus
AAUCAAUCAGCAUUUAUGAGCCGCCAUAAAA_GCA_GAGCAC______CUGCUUGGAGUGUUUAUUGGAUGCCAUU_______UAUAGUAUAUUCGCGUAUAUUUUGAUUGAUUG
((((((((((.....(((.((.((((((((......((((..........))))......)))).)))).)))))...........((((((......)))))))))))))))). (-18.30 = -18.47 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:35 2006