Locus 4350

Sequence ID 2R_DroMel_CAF1
Location 14,303,914 – 14,304,005
Length 91
Max. P 0.997558
window6965

overview

Window 5

Location 14,303,914 – 14,304,005
Length 91
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 78.62
Mean single sequence MFE -27.00
Consensus MFE -20.33
Energy contribution -19.70
Covariance contribution -0.63
Combinations/Pair 1.29
Mean z-score -2.64
Structure conservation index 0.75
SVM decision value 2.88
SVM RNA-class probability 0.997558
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14303914 91 + 20766785
----------AAUUUUAUCGGAACUACCUUAUU------ACAAGUUGGUUUCGAUACGGGCAAACAGCAGGUGACCUCUUGCUUUUGGUUUGUUUUCAAAAAUGGAA
----------.....(((((((((((.(((...------..))).))))))))))).((((((((((((((......))))))....))))))))............ ( -24.80)
>DroSec_CAF1 33102 91 + 1
----------AAUUUCAUCGGAACUACCUUCUU------CCAAAUUGGUUUCGAUACGAGCAAACCGCAGGUGACCUCUUGCUUUUGGUUUGUUUCCAAAAUUGGAA
----------......((((((((((.......------......))))))))))...(((((((((.(((..(....)..))).)))))))))((((....)))). ( -25.22)
>DroSim_CAF1 35139 89 + 1
----------AACUUCAUCGGAACUACCUUAUU------ACAAGUUGGUUUCGAUACGAGCAAGCAGCAGGUGACCUCUUGCUUUUGGUUUGUUCC--AAAUUGGAA
----------...(((((((((((((.(((...------..))).))))))))))..((((((((((((((......))))))....)))))))).--.....))). ( -27.30)
>DroEre_CAF1 33736 107 + 1
UUUCAUCAAAAUUUUCAUCGAAACUGCCUUAUUUGGCUAACAAGUUGGCUUCGAUGCAGGCAAGCAGCAGGUGAUCUCUUGAUCUUGUUCUGUUGCCAAAAUUGGAG
.....((((......(((((((...(((..(((((.....))))).)))))))))).......((((((((.((((....))))....)))))))).....)))).. ( -30.70)
>consensus
__________AAUUUCAUCGGAACUACCUUAUU______ACAAGUUGGUUUCGAUACGAGCAAACAGCAGGUGACCUCUUGCUUUUGGUUUGUUUCCAAAAUUGGAA
................((((((((((.(((...........))).))))))))))(((((((((.((((((......)))))))))).))))).............. (-20.33 = -19.70 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:34 2006