Locus 4348

Sequence ID 2R_DroMel_CAF1
Location 14,297,837 – 14,297,930
Length 93
Max. P 0.737151
window6963

overview

Window 3

Location 14,297,837 – 14,297,930
Length 93
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 81.57
Mean single sequence MFE -18.40
Consensus MFE -7.45
Energy contribution -6.85
Covariance contribution -0.60
Combinations/Pair 1.15
Mean z-score -2.49
Structure conservation index 0.40
SVM decision value 0.44
SVM RNA-class probability 0.737151
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14297837 93 + 20766785
UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCCCUUGGCAAAACUCUAUCCCCAUCCCC-GUUUUGUUAAUUUCAAUUAACCACAACAAA
..((..(((((...))))).))((((((......------------....((((((((((...............-))))))))))..........)))))).... ( -16.81)
>DroSec_CAF1 27085 93 + 1
UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCCCUUUGCAAAUCUCUAUCCCCAUCCCC-GUUUCGUUAAUUUCAAUUAACCACAACAAA
..((((((((...(((((((....)))..)))).------------......))))))))...............-(((..((((((....))))))...)))... ( -14.40)
>DroSim_CAF1 27189 93 + 1
UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCCCUUUGCAAAUCUCUAUCCCCAUCCCC-GUUUCGUUAAUUUCAAUUAACCACAACAAA
..((((((((...(((((((....)))..)))).------------......))))))))...............-(((..((((((....))))))...)))... ( -14.40)
>DroEre_CAF1 27696 92 + 1
UCGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCC-CUUGCAAAUCGGUAUCCCCAUCCCC-GUUUUGUUAAUUUCAAUUAACCACAACAAA
((((((((((...(((((((....)))..)))).------------...-..)))))))))).............-(((..((((((....))))))...)))... ( -17.80)
>DroAna_CAF1 33846 103 + 1
UUGAUUUGCAUUUAGUGCAUUCUUGUGGACAUGGCUGGGACAUGGCCCCCCAGG-UCCCCUCUA--CCCACUCCUUUGUCUGCUAAUUUCAAUUAGCCGUAAGAGA
..((..(((((...))))).))..((((...(((..(((((.(((....))).)-))))..)))--.))))..((((....((((((....))))))....)))). ( -28.60)
>consensus
UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC____________CCCCUUUGCAAAUCUCUAUCCCCAUCCCC_GUUUUGUUAAUUUCAAUUAACCACAACAAA
..((..(((((...))))).))..((((.......................................)))).....(((..((((((....))))))...)))... ( -7.45 =  -6.85 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:32 2006