Locus 4346

Sequence ID 2R_DroMel_CAF1
Location 14,292,588 – 14,292,688
Length 100
Max. P 0.544593
window6961

overview

Window 1

Location 14,292,588 – 14,292,688
Length 100
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.85
Mean single sequence MFE -24.28
Consensus MFE -15.88
Energy contribution -16.97
Covariance contribution 1.09
Combinations/Pair 1.19
Mean z-score -1.56
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.544593
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14292588 100 + 20766785
UUCGAAGCA------AUCUUCAUUCGAUGCCUCUUUCCUCAACUGAAUGAAUGAAUGAAGGGCAACAUGCGAAUGGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU
...(((((.------.....((((((.((((.((((..(((..........)))..)))))))).....)))))))))))...(((((((....)))))))..... ( -24.70)
>DroPse_CAF1 24010 96 + 1
-CCGAAACG------ACCUUUCGUCACCGGCCACCUUUUGCAUUGGUUGAAU---UGAACGACAAUUCGGGGAUCGCUGCAAUUGCGUGAAAUAUCGUGCAUAACU
-(((..(((------(....))))...))).((((..(((((.(((((((((---((.....))))))...))))).)))))..).)))................. ( -21.40)
>DroSec_CAF1 21771 100 + 1
UUCGAAGCA------AUCUUCAUUCAAUGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACAUGCGAAUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU
...(((((.------.((((((((((((.............)))))))))).)).((.(((....))).))....)))))...(((((((....)))))))..... ( -25.82)
>DroSim_CAF1 21821 100 + 1
UUCGAAGCA------AUCUUCAUUCAAUGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACAUGCGAAUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU
...(((((.------.((((((((((((.............)))))))))).)).((.(((....))).))....)))))...(((((((....)))))))..... ( -25.82)
>DroEre_CAF1 22344 106 + 1
UUCGAAGCUUGAACUCCGUUCAUUCAAUGCCUCUUUCCUCAAUUGAAUGAAUGAAUGAAUGGCAACUUGCGAAUCGCCUCAAUUGCGUGAAAUUUCGUGCAUAACU
...((.((........((((((((((((.............))))))))))))...((.(.((.....)).).)))).))...(((((((....)))))))..... ( -23.72)
>DroYak_CAF1 22340 106 + 1
UUCGCAGCUUGAACUCUGUUCAUUCAACGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACUUGCGAGUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU
(((((((.(((....(((((((((((........((((((....))).))))))))))))))))).)))))))..........(((((((....)))))))..... ( -24.20)
>consensus
UUCGAAGCA______AUCUUCAUUCAAUGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACAUGCGAAUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU
...(((((..........((((((((((.............)))))))))).....((.(.((.....)).).)))))))...(((((((....)))))))..... (-15.88 = -16.97 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:30 2006