Locus 4340

Sequence ID 2R_DroMel_CAF1
Location 14,270,795 – 14,270,908
Length 113
Max. P 0.846611
window6954

overview

Window 4

Location 14,270,795 – 14,270,908
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 81.31
Mean single sequence MFE -33.12
Consensus MFE -24.85
Energy contribution -24.67
Covariance contribution -0.19
Combinations/Pair 1.36
Mean z-score -1.97
Structure conservation index 0.75
SVM decision value 0.77
SVM RNA-class probability 0.846611
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14270795 113 - 20766785
AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUGAUUGUGAAAGUCAGUAGUGAGAGUGUGGGUCUCUGGAUUUCUUUGGGUUUCCAAUCUAAAAAGGAAAAAAUGCCUUUA
..............((.(((((((((..((((((((((.....)))))))..)))..)))))))))))((((..((....))..))))......(((((........))))). ( -36.00)
>DroSec_CAF1 152 112 - 1
AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUCAUUGUGAAAGUCAGUAGUCAGAGUGUGGGUCUCUGGGUUCCUUUGAGUUUCCAAUCUAAAAAGGGAA-AAUGCUGUUA
.(((......(((((.(((((((((.(((..(((.(((((....).)))))))..)))))))))))).)))))((((((.((........))...)))))).-...))).... ( -35.10)
>DroSim_CAF1 152 112 - 1
AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUCAUUGUGAAAGUCAGUAGUCAGAGUGUGGCUCUCCGGAUUCCUUUGAGUUUCCAAUCUAAAAAGGGAA-AAUUCUUUUA
.........((((((((((.(((((.(((..(((.(((((....).)))))))..)))))))).((....))..))))))))))...........((((((.-...)))))). ( -25.70)
>DroEre_CAF1 154 112 - 1
AGGCUAAUGGACUCGAAGGCCCACAUCUUUAGCUGAUUGUGAAAGUCGGUGCUCAGAGUGUGGGUCUCUGGAUUCCUUUGAGUUUCCAAUCUAAAAACCGAA-AAUGCAUUUA
..((....(((.((.(((((((((((((...(((((((.....)))))))....))).))))))))).).)).)))((((.((((.........))))))))-...))..... ( -32.80)
>DroYak_CAF1 152 110 - 1
AAGCUAAUGGACUCGAAGGCCCACAUCUUCAGCUGAUUGUGAAAGUCAGUACUCAGAGUGUGGGUCUCUGGAUUCCUCUGAGUUUCCAAUCUAAAAAAAGA---GUCAACUGG
.........(((((((.(((((((((((...(((((((.....)))))))....))).))))))))))((((..(......)..))))...........))---)))...... ( -35.70)
>DroPer_CAF1 2321 108 - 1
AAGCUGAUGGACUCAAAGGCCCAAUUCUUCAGCUGAUCAUGGAAGUCAGCCUGGAGCAAGUGGGUUUCCGGAUCCCUCUGACUCUCCAGUCUGGAAAGUGUA-UAAC----CA
.....((.(((..(..(((((((.(((((((((((((.......))))).)))))).)).)))))))..)..))).))..(((.(((.....))).)))...-....----.. ( -33.40)
>consensus
AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUGAUUGUGAAAGUCAGUAGUCAGAGUGUGGGUCUCUGGAUUCCUUUGAGUUUCCAAUCUAAAAAGGGAA_AAUGCAUUUA
.........(((((((((((((((((((...(((((((.....)))))))....)).)))))))((....))..))))))))))............................. (-24.85 = -24.67 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:23 2006