Locus 4337

Sequence ID 2R_DroMel_CAF1
Location 14,246,555 – 14,246,655
Length 100
Max. P 0.661771
window6950

overview

Window 0

Location 14,246,555 – 14,246,655
Length 100
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.82
Mean single sequence MFE -29.22
Consensus MFE -17.08
Energy contribution -17.47
Covariance contribution 0.39
Combinations/Pair 1.26
Mean z-score -1.82
Structure conservation index 0.58
SVM decision value 0.27
SVM RNA-class probability 0.661771
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14246555 100 + 20766785
AGUGCAGUGCAUUAGCUUGUUGUCGGC-AAAGCCGUGGGAAAUGCGGG---AAAAACGAAGGGCUGAAGGCGGUGGGCU-AACUAACUUUAAUUGCAGCUGUAAA
..(((((((((((((((..((((((((-....(((((.....))))).---.....(....))))...)))))..))))-))...........)))).))))).. ( -30.30)
>DroSec_CAF1 3254 100 + 1
AGUGCAGUGCAUUAGCUUGUUGUGGAA-AAAGCGGCGGGAAAUGCGGG---AAAAGCGAAGGGCUGAAGGCGGUCUGCU-AACUAACUUUAAUUGCAGCUGUAAA
..(((((((((((..((((((((....-...)))))))).)))))...---...(((...((((((....)))))))))-.................)))))).. ( -26.80)
>DroSim_CAF1 3395 100 + 1
AGUGCAGUGCAUUAGCUUGUUGUGGAA-AAAGCGGCGGGAAAUGCGGG---AAAAGCGAAGGGCUGAAGGCGGUCUGCU-AACUAACUUUAAUUGCAGCUGUAAA
..(((((((((((..((((((((....-...)))))))).)))))...---...(((...((((((....)))))))))-.................)))))).. ( -26.80)
>DroEre_CAF1 3427 97 + 1
AGUGCAGUGCAUUUGCUGGUUGUAGGG-AAAGCGGCGGCAAAUGCGGG---AAAAAC---GGGCUGAAGGCGGUGUGCU-AACUAACUUUAAUUGCGGCUGUAAA
..((((((((((((((((.((((....-...))))))))))))))...---.....(---(.(.(((((..(((.....-.)))..)))))..).)))))))).. ( -30.50)
>DroYak_CAF1 3481 95 + 1
AGUGCAGUGCAUUAGCUUGUUGGGCGGAAAAGCG--GGCAAAAGCG-G---AAAAAC---GAGCUGAAGGCAGUGUGCU-AACUAACUUUAAUUGCGGCUGUAAA
((..((.(((.((((((((((..((......)).--.((....)).-.---...)))---)))))))..))).))..))-............((((....)))). ( -27.80)
>DroAna_CAF1 3847 105 + 1
AGUGCAGUGCAUUAGGUUGUGCAGGAAGAGAGCGGUUUGCAGGGCGGUUGGCAGGGGCAGGGAGUGAGGCAAGCCCGUUGCACUAACUUUAAUUGCAGCUGUAAA
..(((((((((..(((((((((((...(..(((.(((.....))).)))..)..((((..(........)..)))).)))))).)))))....)))).))))).. ( -33.10)
>consensus
AGUGCAGUGCAUUAGCUUGUUGUGGAA_AAAGCGGCGGGAAAUGCGGG___AAAAACGAAGGGCUGAAGGCGGUCUGCU_AACUAACUUUAAUUGCAGCUGUAAA
..(((((((((...((((.((((........((..........))..........)))).))))(((((..(((.......)))..)))))..)))).))))).. (-17.08 = -17.47 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006