Locus 4335

Sequence ID 2R_DroMel_CAF1
Location 14,244,764 – 14,244,884
Length 120
Max. P 0.601365
window6948

overview

Window 8

Location 14,244,764 – 14,244,884
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.78
Mean single sequence MFE -55.77
Consensus MFE -32.27
Energy contribution -32.00
Covariance contribution -0.27
Combinations/Pair 1.44
Mean z-score -1.76
Structure conservation index 0.58
SVM decision value 0.14
SVM RNA-class probability 0.601365
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14244764 120 - 20766785
UCUGGAGAUAUCCCUGGGCCAGUUCACGGGUCGCGGCGUGGUCAAGGCCUUCGAUAUGGCUCCCCUGCUCAAGGGCGUGGCAUUGGGUCAAGUCCUGGCCACAGCCGCCUCCAUCACAUA
..(((((....(((((((....)))).)))..((((((((((((.((.(((.((((((.(.(((((.....)))).).).)))...)))))).))))))))).))))))))))....... ( -50.10)
>DroVir_CAF1 1558 120 - 1
UUUGGAGAUCUCUCUGGGCCAGUUUCGCGGCGGCGGCGUGUUGCGCGCCUUCGAUUUGGCGCCCUUGUUAAAGGGCGUGGCUGCCGGACAGGUGCUGGCCACAGGCGCCUCCAUCACCUA
..(((((.....(((((((((((.((.(((((((((((((...)))))).........((((((((....)))))))).)))))))....)).))))))).))))...)))))....... ( -61.90)
>DroGri_CAF1 15325 120 - 1
UUUGGAGAUCUCUUUGGGUCAGUUUCGUGGCGGCGGUGUUCUGCGCGCCUUUGAUCUGGCGCCCAUACUAAAGGGCGUGGCAGCGGGUCAGGUGCUGGCCACGGGCGCCUCCAUAACCUA
..(((((((((....))))).(((.((((((.((((....))))((((((..((((((((((((........)))))).....))))))))))))..)))))))))...))))....... ( -51.20)
>DroMoj_CAF1 2278 120 - 1
CUUGGAGAUCUCGCUGGGUCAGUUUCGUGGCGGCGGCGCGCUGCGCGCCUUCGAUCUGGCACCGCUGCUCAAGGGCGUGGCUGCCGGCCAGGUGCUGGCCACAGGCGCCUCCAUCACCUA
..(((((....((((.(((((((..(.((((((.((((((...)))))).))....(((((((((.(((....))))))).))))))))).).)))))))...)))).)))))....... ( -60.50)
>DroAna_CAF1 1546 120 - 1
CCUGGAGAUAGCCCUGGGCCAGUUUUCGGGACGCGGCGUGGUCAAGGCCUUCGAUAUGGCGCCGAUUCUCAAGGGAGUGGCGGCGGGCCAGGUCCUGGCCACCGCGGCCUCUAUCACCUA
...((.(((((....(((((.(((.....)))((((..((((((.(((((..(...((.((((.(((((....))))))))).))..).))))).)))))))))))))))))))).)).. ( -54.40)
>DroPer_CAF1 1441 120 - 1
UCUGGAGAUAGCCUUGGGCCAGUUCACUGGCCGCGGAGUGGUCAAGGCCUUCGAUAUGGCACCCCUGCUCAAGGGCGUGGCAGUGGGACAGGUGCUGGCCACGGGGGCCUCGAUUACCUA
(((((((.....))).((((((....)))))).))))((((((.((((((((....((.(((((((.....)))).))).))((((..(((...))).)))))))))))).))))))... ( -56.50)
>consensus
UCUGGAGAUAUCCCUGGGCCAGUUUCCUGGCCGCGGCGUGGUCAACGCCUUCGAUAUGGCGCCCCUGCUCAAGGGCGUGGCAGCGGGACAGGUGCUGGCCACAGGCGCCUCCAUCACCUA
..(((((......(((((((((..((....(((((((.(.....).)))........(.(((((((.....)))).))).).))))....))..)))))).)))....)))))....... (-32.27 = -32.00 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:17 2006