Locus 4334

Sequence ID 2R_DroMel_CAF1
Location 14,244,578 – 14,244,684
Length 106
Max. P 0.628763
window6947

overview

Window 7

Location 14,244,578 – 14,244,684
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 73.86
Mean single sequence MFE -30.36
Consensus MFE -16.97
Energy contribution -17.78
Covariance contribution 0.81
Combinations/Pair 1.33
Mean z-score -1.51
Structure conservation index 0.56
SVM decision value 0.20
SVM RNA-class probability 0.628763
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14244578 106 - 20766785
AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUACCUCCACUUUUAAAUCAUUC
((((.(((((.((..((((((.....))))))((((((((((((.(((...............))).)))))..)))))))..)).)).))))))).......... ( -30.26)
>DroVir_CAF1 1372 106 - 1
AGAGCUGGGGCAGCGAUUGCUACGAUGGUGGCUCGGUAAAUGCCACUGGUAAAAUGUCACCCGCGCAGCUGUACUUUGAGUGAGUAAACAUAUCUGGAGGGUAUGU
..((((((((..(((.(((((.....((((((.........)))))))))))..)))..)))...))))).(((((.....))))).(((((((.....))))))) ( -30.70)
>DroSec_CAF1 1356 82 - 1
AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAG------------------------UC
...((((.((((.....))))....))))...((((((((((((.(((...............))).)))))..))))))------------------------). ( -23.56)
>DroSim_CAF1 1430 106 - 1
AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUAUCUCCACUCUUAAUUCAUUC
((((.(((((.....((((((.....))))))((((((((((((.(((...............))).)))))..)))))))......))))))))).......... ( -32.06)
>DroYak_CAF1 1473 106 - 1
AGAGCUGGGGCACCGAUUGCCACGAUGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUACCUCCACUUUUAAUUAAUUC
((((.(((((.((..((((((.....))))))((((((((((((.(((...............))).)))))..)))))))..)).)).))))))).......... ( -30.56)
>DroMoj_CAF1 2108 90 - 1
CGAGCUGGGGCAGCGACUGCCACGAUGUGAGCGCGGCGAAUGCCAGUGGCAAAAUGUCACCAGCUCAGCUGUAUUUUGAGUGAGUGAAGA----------------
.(((((((((((.....((((((...((....))(((....))).))))))...)))).)))))))..((.(((((.....))))).)).---------------- ( -35.00)
>consensus
AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUAACUCCACUUUUAA_U_AUUC
...(((((((((...((((((.....))))))(((......)))..........)))).)))))...(((........)))......................... (-16.97 = -17.78 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:16 2006