Locus 4333

Sequence ID 2R_DroMel_CAF1
Location 14,241,613 – 14,241,706
Length 93
Max. P 0.623691
window6946

overview

Window 6

Location 14,241,613 – 14,241,706
Length 93
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 83.31
Mean single sequence MFE -25.54
Consensus MFE -14.73
Energy contribution -15.37
Covariance contribution 0.64
Combinations/Pair 1.06
Mean z-score -2.13
Structure conservation index 0.58
SVM decision value 0.18
SVM RNA-class probability 0.623691
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14241613 93 + 20766785
ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG----GGUGGCUGUUUGGGUGGUGGUUAUGCCGCACGCAA
.(....).......(((.(((..((..((((.(.((((....)))).)...))).)..----))..))).)))..(((((((.....)))).))).. ( -27.50)
>DroSec_CAF1 20888 78 + 1
ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG----GGUGGCUGUAUG---------------GCACGCAA
.(....).............((((.(((((..((((((..(((..(.....)..))).----.)).))))..))---------------))).)))) ( -21.00)
>DroSim_CAF1 26290 78 + 1
ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG----GGUGGCUGUGUG---------------GCACGCAA
.(....).............((((.(((((((..((((..(((..(.....)..))).----.)).))..))))---------------))).)))) ( -26.30)
>DroEre_CAF1 21644 82 + 1
ACGAACGAAAUGAAGGAAAGUUGUUUGCCGCGUAGCACAGACGUGUGGAAAGUGUGUG----GGUGGUGGUG----------GCAUGCCACACGCA-
.(((((((..(......)..)))))))..((((..((((.((.........)).))))----.((((((...----------...)))))))))).- ( -23.10)
>DroYak_CAF1 21334 93 + 1
ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUGUGUGGGUGGCGGUGUGGGU---GGUUGUGCCACACGCA-
.(....)..................((((((.(.(((((.(((.........))).))))).)))))))((((((((---......))).))))).- ( -29.80)
>consensus
ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG____GGUGGCUGUGUG___________UGCCGCACGCAA
.(....)...................(((((....((((.((.........)).)))).....))))).(((((................))))).. (-14.73 = -15.37 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:15 2006